Browse Element(s) Details


Os.5956.1.S1_at

Description gb:AU173352
DB_XREF= gi:12623139
DB_XREF=AU173352
CLONE=R2388
TID=Os.5956.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5956 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1063011/11H+-ATPase FO-part b-subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10590OsAffx.23189.1.S1_s_at11/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.2.S1_at10/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.1.S1_at6/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10600Os.45980.1.S1_s_at10/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.45980.1.S1_at8/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.23187.1.S1_at5/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.9949.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.1288.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10610Os.1302.1.S1_at11/111+5665791..5668272BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10640Os.1305.1.S1_at11/111+5682396..5683203expressed protein
LOC_Os01g10650OsAffx.1979.1.S1_x_at11/111+5686691..5687149hypothetical protein
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_x_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_s_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10680Os.33166.1.S1_at11/111+5696454..5704560expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5956.1.S1_at--996--6871Chr01:5674316..5674340 (25 bp)
GTATACCAGGTAGACAAGCATTCAT
LOC_Os01g10630
Os.5956.1.S1_at--330--2711Chr01:5674301..5674325 (25 bp)
AAGCATTCATGTTTCGTACATTTTA
LOC_Os01g10630
Os.5956.1.S1_at--816--10351Chr01:5674280..5674304 (25 bp)
TTTATTTACTTGATACTATGTGACA
LOC_Os01g10630
Os.5956.1.S1_at--194--7751Chr01:5674219..5674243 (25 bp)
GGTGCTTTTGCCAGAGAGGTGACCA
LOC_Os01g10630
Os.5956.1.S1_at--506--2031Chr01:5674148..5674172 (25 bp)
ACTACCTGAAGGTTAGAGCGCTGAC
LOC_Os01g10630
Os.5956.1.S1_at--77--5891Chr01:5674133..5674157 (25 bp)
GAGCGCTGACCTCGCATATTTATAT
LOC_Os01g10630
Os.5956.1.S1_at--1088--31Chr01:5674110..5674134 (25 bp)
ATTGTGTGTAACTTCTGTTGAGGCA
LOC_Os01g10630
Os.5956.1.S1_at--435--7851Chr01:5674083..5674107 (25 bp)
GGTATGTGAACCTGACTGAGTAGCA
LOC_Os01g10630
Os.5956.1.S1_at--370--1771Chr01:5674074..5674098 (25 bp)
ACCTGACTGAGTAGCAATTGACGAT
LOC_Os01g10630
Os.5956.1.S1_at--8--3171Chr01:5674059..5674083 (25 bp)
AATTGACGATAGCTGTAAACTGCCA
LOC_Os01g10630
Os.5956.1.S1_at--908--4731Chr01:5674048..5674072 (25 bp)
GCTGTAAACTGCCAAGCTCATACTG
LOC_Os01g10630
Target Sequence 
GTATACCAGGTAGACAAGCATTCATGTTTCGTACATTTTATTTACTTGATACTATGTGACAAGGTNTAAAACATAATTAT
AACATGTTTTTTTTTNTGGTGCTTTTGCCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGT
TTGCAAATACTACCTGAAGGTTAGAGCGCTGACCTCGCATATTTATATTGTGTGTAACTTCTGTTGAGGCAGGGGTATGT
GAACCTGACTGAGTAGCAATTGACGATAGCTGTAAACTGCCAAGCTCATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis