Browse Element(s) Details


Os.6001.1.S1_at

Description gb:AK121939.1
DB_XREF= gi:37991562
TID=Os.6001.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0094K20.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107D06, full insert sequence.
FL= gb:AK121939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3091011/11transmembrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30930NANA10+15805796..15806734retrotransposon protein, putative, unclassified
LOC_Os10g30944Os.46594.2.S1_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.2.S1_x_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.1.S1_at8/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.3.S1_at2/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6001.1.S1_at--199--6771Chr10:15801025..15801049 (25 bp)
GTTAATCATAGTCCGGAGCCAAGCT
LOC_Os10g30910
Os.6001.1.S1_at--405--10551Chr10:15801069..15801093 (25 bp)
TTCATTGCCAAGATCAGAGCCGAGA
LOC_Os10g30910
Os.6001.1.S1_at--666--2291Chr10:15801120..15801144 (25 bp)
AAATGTACATCTGCCTGTTCACGTT
LOC_Os10g30910
Os.6001.1.S1_at--542--1871Chr10:15801140..15801164 (25 bp)
ACGTTATCGGCTTGGGTGTTTTATG
LOC_Os10g30910
Os.6001.1.S1_at--571--851Chr10:15801162..15801186 (25 bp)
ATGGCCAAACAGCTTACTGGACCTA
LOC_Os10g30910
Os.6001.1.S1_at--16--4271Chr10:15801236..15801260 (25 bp)
CCGGCCTCTTCAGGTAGGTATATAT
LOC_Os10g30910
Os.6001.1.S1_at--1153--4751Chr10:15801348..15801372 (25 bp)
GCTGCATCGCATCCGAACTGTAAAT
LOC_Os10g30910
Os.6001.1.S1_at--690--2031Chr10:15801408..15801432 (25 bp)
ACTATTGGCACGATCTTTGTCTGGA
LOC_Os10g30910
Os.6001.1.S1_at--383--7971Chr10:15801439..15801463 (25 bp)
GGATCCCGGATAATTGATACCCATC
LOC_Os10g30910
Os.6001.1.S1_at--658--8631Chr10:15801469..15801493 (25 bp)
TGGGTATTCTGTAGCAATGCAACTT
LOC_Os10g30910
Os.6001.1.S1_at--1025--10371Chr10:15801492..15801516 (25 bp)
TTTTAAGATGTGATACCGCCCCTAT
LOC_Os10g30910
Target Sequence 
GTTAATCATAGTCCGGAGCCAAGCTACGAGTTGACGAGGCAAAATTCATTGCCAAGATCAGAGCCGAGAGAAACCTAACG
AACCCAAGACACCACAAATGTACATCTGCCTGTTCACGTTATCGGCTTGGGTGTTTTATGGCCAAACAGCTTACTGGACC
TACCCTGGAAGAAGAGTTGAATGCCATATTCTTTTTGACAGTGTGCATGCACCGGCCTCTTCAGGTAGGTATATATGGCT
TCCATGATTTTTGGGGTGTAATTCCATGAACAATTAAAGGGGATAGATTTTGTAACTAGTACATGTACCATTAGAGGAGA
TCTGCTGCATCGCATCCGAACTGTAAATAGAGTGGGTGCAGAGAACGGAAAATATATACTCCTACTATTGGCACGATCTT
TGTCTGGATGATACGGATCCCGGATAATTGATACCCATCGGAGTTGGGTATTCTGTAGCAATGCAACTTTTAAGATGTGA
TACCGCCCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis