Browse Element(s) Details


Os.6001.2.S1_at

Description gb:NM_196736.1
DB_XREF= gi:37534831
TID=Os.6001.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0094K20.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094K20.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g309101/11transmembrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30930NANA10+15805796..15806734retrotransposon protein, putative, unclassified
LOC_Os10g30944Os.46594.2.S1_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.2.S1_x_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.1.S1_at8/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.3.S1_at2/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6001.2.S1_at--970--4951Chr10:15801014..15801187 (25 bp)
GCATCAATACGCTTACTGGACCTAC
LOC_Os10g30910
Os.6001.2.S1_at--1150--4451NONE
GCCTCTTCAGGTTGGACAGCTTCGA
NONE
Os.6001.2.S1_at--331--2931Chr10:15802399..15802423 (25 bp)
AAGGACTCTGGAACCTGGCTGGACA
NONE
Os.6001.2.S1_at--90--8531Chr10:15802418..15802442 (25 bp)
TGGACAAGTCACAATTGCCGCCGAC
NONE
Os.6001.2.S1_at--357--2071Chr10:15802451..15802475 (25 bp)
ACTTGAGCAGTCGTGGCTCGCCGAG
NONE
Os.6001.2.S1_at--798--4231Chr10:15802471..15802495 (25 bp)
CCGAGGACTCTGAGAGCTCGCTGGA
NONE
Os.6001.2.S1_at--529--6191Chr10:15802517..15802541 (25 bp)
GAGGACAAACTCATGGCTGGATGAC
NONE
Os.6001.2.S1_at--213--10691Chr10:15804258..15804278 (21 bp)
TTCCAAGTTATAATCCACTCCTCTT
NONE
Os.6001.2.S1_at--306--1811Chr10:15804270..15804294 (25 bp)
ACTCCTCTTCGACATTTTAGGCCAA
NONE
Os.6001.2.S1_at--996--5951Chr10:15804310..15804334 (25 bp)
GAGAATGCACTTAATCTATCCAAAG
NONE
Os.6001.2.S1_at--742--8911Chr10:15804378..15804402 (25 bp)
TGACCACGGTTTTCTTAGTGTCCAT
NONE
Target Sequence 
GCATCAATACGCTTACTGGACCTACCCTGGAAGAAGAGTTGAATGCCATATTCTTTTTGACAGTGTGCATGCACCGGCCT
CTTCAGGTTGGACAGCTTCGAGAAGGACTCTGGAACCTGGCTGGACAAGTCACAATTGCCGCCGACGTGCAGCGACTTGA
GCAGTCGTGGCTCGCCGAGGACTCTGAGAGCTCGCTGGAGAGGCAGTTGTCGAACAGCTGGAGGACAAACTCATGGCTGG
ATGACGAAAGTGGCACGGAAAGAAGGAATTCACACCCCCGATGGGACATTGAATACACAACATATCTGAAATACACTAGT
TGGTTTTGTACCAACAGTGGTATTCTTCCAAGTTATAATCCACTCCTCTTCGACATTTTAGGCCAAAGGGAGCCAACATG
TGAGAATGCACTTAATCTATCCAAAGATGACCACGGTTTTCTTAGTGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6001.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis