Browse Element(s) Details


Os.6020.1.S1_at

Description gb:AK107316.1
DB_XREF= gi:32992525
TID=Os.6020.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-E01, full insert sequence.
FL= gb:AK067345.1 gb:AK107316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0174011/11VHS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01710OsAffx.28981.1.S1_at11/118+428885..430687glycolipid transfer protein, putative
LOC_Os08g01720NANA8+433131..433424hypothetical protein
LOC_Os08g01730OsAffx.16780.1.S1_at11/118+434401..435121hypothetical protein
LOC_Os08g01740Os.6020.1.S1_at11/118+439196..444042VHS domain containing protein, expressed
LOC_Os08g01750Os.8086.1.S1_at11/118+444796..451880phosphoinositide phosphatase family protein, putative, expressed
LOC_Os08g01760Os.11284.1.S1_at11/118+452186..454961oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g01770Os.11664.1.S1_at10/118+455090..458466Adenylate kinase, chloroplast, putative, expressed
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6020.1.S1_at--981--1611Chr08:443510..443534 (25 bp)
AGCTGTGTGAGTGACCATCTGCATT
LOC_Os08g01740
Os.6020.1.S1_at--353--3551Chr08:443525..443549 (25 bp)
CATCTGCATTGGTTTTACTCTACTT
LOC_Os08g01740
Os.6020.1.S1_at--985--10331Chr08:443538..443562 (25 bp)
TTTACTCTACTTTCATCTCCTTTTG
LOC_Os08g01740
Os.6020.1.S1_at--699--9491Chr08:443553..443577 (25 bp)
TCTCCTTTTGGCTTTCTGATGTGTA
LOC_Os08g01740
Os.6020.1.S1_at--436--9071Chr08:443602..443626 (25 bp)
TGCTTGTGTCAGAAGCGTGCCATTC
LOC_Os08g01740
Os.6020.1.S1_at--776--9771Chr08:443644..443668 (25 bp)
TAATGGATCAGTTGAGCCCCATGAT
LOC_Os08g01740
Os.6020.1.S1_at--950--7691Chr08:443683..443707 (25 bp)
GGGTCACTCTTCTCAATAGCATTGT
LOC_Os08g01740
Os.6020.1.S1_at--68--5711Chr08:443724..443748 (25 bp)
GACTATGAGACACCTTTCTGGCAAG
LOC_Os08g01740
Os.6020.1.S1_at--786--8211Chr08:443743..443767 (25 bp)
GGCAAGACCAAAGATCCACTAGTAT
LOC_Os08g01740
Os.6020.1.S1_at--887--3051Chr08:443791..443815 (25 bp)
AATCTTGAATGGTTAGGCTGGCTTG
LOC_Os08g01740
Os.6020.1.S1_at--259--6891Chr08:443821..443845 (25 bp)
GTATTTGACTCTACCTGCTAGTGGA
LOC_Os08g01740
Target Sequence 
AGCTGTGTGAGTGACCATCTGCATTGGTTTTACTCTACTTTCATCTCCTTTTGGCTTTCTGATGTGTAGTAGTGGAGTAG
TGCTGTGGGTTTTGCTTGTGTCAGAAGCGTGCCATTCNGCTTTTAGCCAGCAGATAATGGATCAGTTGAGCCCCATGATC
ATGGTGGTGTTGTGGGTCACTCTTCTCAATAGCATTGTAAAAGATTATGCCCATGACTATGAGACACCTTTCTGGCAAGA
CCAAAGATCCACTAGTATCCTGGAGTAAGTATCTTTGAGACAATCTTGAATGGTTAGGCTGGCTTGCCAAAGTATTTGAC
TCTACCTGCTAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis