Browse Element(s) Details


Os.6093.2.S2_at

Description gb:AK067211.1
DB_XREF= gi:32977229
TID=Os.6093.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096B12, full insert sequence.
FL= gb:AK065056.1 gb:AK067211.1 gb:AK121138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0211011/11NB-ARC domain containing protein, expressed
LOC_Os12g345241/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein
LOC_Os04g02100OsAffx.25836.1.S1_at11/114+670089..671527hypothetical protein
LOC_Os04g02110Os.6093.2.S2_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.3.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.2.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02120OsAffx.25837.1.S1_at11/114+684309..686831hypothetical protein
LOC_Os04g02130NANA4+694746..695321retrotransposon protein, putative, unclassified
LOC_Os04g02140NANA4+697336..702030transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6093.2.S2_at--20--6478Chr10:10454678..10454709 (25 bp)
GATAAGCTAGCTGAGAGCCAACATC
NONE
Os.6093.2.S2_at--878--58516Chr10:10454699..10454723 (25 bp)
GAGCCAACATCCTTAATTTTTCACT
NONE
Os.6093.2.S2_at--381--10511Chr04:672011..672035 (25 bp)
TTAATTTTTCACTACATCTCTCCGC
LOC_Os04g02110
Os.6093.2.S2_at--1001--451Chr04:671996..672020 (25 bp)
ATCTCTCCGCCACCTAAGGTTATAA
LOC_Os04g02110
Os.6093.2.S2_at--741--2311Chr04:671907..671931 (25 bp)
AAAGGTACGCATGTACATGCCTTTG
LOC_Os04g02110
Os.6093.2.S2_at--245--3691Chr04:671887..671911 (25 bp)
CTTTGGAATTTAGGTGGGCAGCACC
LOC_Os04g02110
Os.6093.2.S2_at--399--1511Chr04:671868..671892 (25 bp)
AGCACCGGACGCGATTGCGTGGAAA
LOC_Os04g02110
Os.6093.2.S2_at--1071--51Chr04:671855..671879 (25 bp)
ATTGCGTGGAAATCTAATAGCCTAC
LOC_Os04g02110
Os.6093.2.S2_at--912--9071Chr04:671841..671865 (25 bp)
TAATAGCCTACGACGGTGGACCGGT
LOC_Os04g02110
Os.6093.2.S2_at--542--5811Chr04:671823..671847 (25 bp)
GACCGGTCGGTTTAAATGATAGTTG
LOC_Os04g02110
Os.6093.2.S2_at--206--5231Chr04:671778..671802 (25 bp)
GAATTTCGAGGATTTCTCTGATTTT
LOC_Os04g02110
Target Sequence 
GATAAGCTAGCTGAGAGCCAACATCCTTAATTTTTCACTACATCTCTCCGCCACCTAAGGTTATAATAGGCTTATAGCTC
ACTATTATACTTGCTCTAAGTAGGAGATAAAGGGCATCGATACGGTGTCAAAAGGTACGCATGTACATGCCTTTGGAATT
TAGGTGGGCAGCACCGGACGCGATTGCGTGGAAATCTAATAGCCTACGACGGTGGACCGGTCGGTTTAAATGATAGTTGA
TGGTCAGATTTTTTTTTTAGAATTTCGAGGATTTCTCTGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6093.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis