Browse Element(s) Details


Os.6094.2.A1_s_at

Description gb:CB638586
DB_XREF= gi:29633577
DB_XREF=OSJNEa07A06.r
CLONE=OSJNEa07A06
TID=Os.6094.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6094 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_190373.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3833011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38300OsAffx.31479.1.S1_x_at11/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38300OsAffx.31479.4.S1_x_at9/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein
LOC_Os11g38320Os.20602.2.S1_x_at11/1111+22193303..22195477hAT family dimerisation domain containing protein
LOC_Os11g38330Os.6094.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330Os.6094.2.A1_s_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.7337.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.766.1.S1_at3/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_s_at1/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_at1/1111+22196370..22202867expressed protein
LOC_Os11g38340OsAffx.7338.1.S1_at11/1111+22207571..22210922hypothetical protein
LOC_Os11g38350NANA11+22211706..22213103retrotransposon protein, putative, unclassified
LOC_Os11g38360NANA11+22214002..22217899retrotransposon protein, putative, unclassified
LOC_Os11g38370OsAffx.32072.2.S1_x_at5/1111+22226290..22226544hypothetical protein
LOC_Os11g38370OsAffx.32072.1.S1_x_at4/1111+22226290..22226544hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6094.2.A1_s_at--669--6471Chr11:22201981..22202005 (25 bp)
GATAAACATTGCAGCTCCATTAGAT
LOC_Os11g38330
Os.6094.2.A1_s_at--26--3471Chr11:22202472..22202492 (21 bp)
CAGTGGTATGTTGTGTCGATGACGA
LOC_Os11g38330
Os.6094.2.A1_s_at--663--6311Chr11:22202485..22202509 (25 bp)
GATGACGAACATGTCTGCTTTGCTC
LOC_Os11g38330
Os.6094.2.A1_s_at--29--7971Chr11:22202525..22202549 (25 bp)
GGATCATATACGAAAGCCAGACAGT
LOC_Os11g38330
Os.6094.2.A1_s_at--861--1691Chr11:22202539..22202649 (25 bp)
AGCCAGACAGTCGAGGTTGCGGATT
LOC_Os11g38330
Os.6094.2.A1_s_at--103--7931Chr11:22202645..22202669 (25 bp)
GGATTGCTGGGAAAGTTTGCTCCAA
LOC_Os11g38330
Os.6094.2.A1_s_at--553--6851Chr11:22202659..22202683 (25 bp)
GTTTGCTCCAACGTTATCACGGAAG
LOC_Os11g38330
Os.6094.2.A1_s_at--555--10511Chr11:22202709..22202733 (25 bp)
TTCGAGATGTTGTGAGTCCATGAAT
LOC_Os11g38330
Os.6094.2.A1_s_at--524--7391Chr11:22202720..22202744 (25 bp)
GTGAGTCCATGAATGAATCCTATAG
LOC_Os11g38330
Os.6094.2.A1_s_at--756--991Chr11:22202743..22202767 (25 bp)
AGGATTTAAACCTTTGTGTGCATTA
LOC_Os11g38330
Os.6094.2.A1_s_at--354--2411Chr11:22202788..22202812 (25 bp)
AAAAACGGAGTCAATATCATGTACC
LOC_Os11g38330
Target Sequence 
GATAAACATTGCAGCTCCATTAGATATTATACATACTGTTTACGAAGTGGATATCAAAAGGATGTACAGTTTGATTACAG
TGGTATGTTGTGTCGATGACGAACATGTCTGCTTTGCTCGTGGAGAGGGAAAATGGATCATATACGAAAGCCAGACAGTC
GAGGTTGCGGATTGCTGGGAAAGTTTGCTCCAACGTTATCACGGAAGAATCCTCCGGCCCCAAATCCTTTTTTTCGAGAT
GTTGTGAGTCCATGAATGAATCCTATAGGATTTAAACCTTTGTGTGCATTATTATTATTATTTTATTTGTAAAAAACGGA
GTCAATATCATGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6094.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis