Browse Element(s) Details


Os.6155.1.S1_at

Description gb:AK111494.1
DB_XREF= gi:37988157
TID=Os.6155.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000D03, full insert sequence.
FL= gb:AK111494.1 gb:AK111862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3677011/11Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36740Os.11886.1.S1_at11/116+21636470..21640985Pollen-specific protein SF21, putative, expressed
LOC_Os06g36740Os.50340.2.S1_x_at1/116+21636470..21640985Pollen-specific protein SF21, putative, expressed
LOC_Os06g36750OsAffx.5031.4.S1_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.4.S1_x_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.3.S1_x_at1/116+21648057..21648551hypothetical protein
LOC_Os06g36760OsAffx.15783.1.S1_at11/116+21652898..21653380hypothetical protein
LOC_Os06g36770Os.6155.1.S1_at11/116+21653909..21661474Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os06g36780OsAffx.27966.1.S1_at11/116+21663958..21664404hypothetical protein
LOC_Os06g36790OsAffx.27967.1.S1_at11/116+21670240..21670560hypothetical protein
LOC_Os06g36800OsAffx.15784.1.S1_at11/116+21676678..21682941MBOAT family protein
LOC_Os06g36810Os.55116.1.S1_at11/116+21684270..21685013expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0000166molecular_functionnucleotide binding
GO:0008601molecular_functionprotein phosphatase type 2A regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6155.1.S1_at--1023--991Chr06:21660883..21660907 (25 bp)
AGGATGTTGTCGTCAATTCCTCCCT
LOC_Os06g36770
Os.6155.1.S1_at--856--2431Chr06:21660915..21660939 (25 bp)
AAAAGAGGCCGTTGATGCCCACAAG
LOC_Os06g36770
Os.6155.1.S1_at--930--1311Chr06:21660938..21660962 (25 bp)
AGATGGCTTTTGTTGCTGTGACTGC
LOC_Os06g36770
Os.6155.1.S1_at--180--3831Chr06:21660959..21660983 (25 bp)
CTGCGTCCTTGTTGATTCTTTAGTA
LOC_Os06g36770
Os.6155.1.S1_at--1072--3051Chr06:21661003..21661027 (25 bp)
AATCATCAGAAGTTTTGGTCCCAAA
LOC_Os06g36770
Os.6155.1.S1_at--405--3291Chr06:21661024..21661048 (25 bp)
CAAAGGATGTGGTCGCAGTTGCCGT
LOC_Os06g36770
Os.6155.1.S1_at--562--5031Chr06:21661038..21661062 (25 bp)
GCAGTTGCCGTACATTCCAAAGTTA
LOC_Os06g36770
Os.6155.1.S1_at--388--2911Chr06:21661091..21661115 (25 bp)
AAGGATTCATTGTGCTAATTTCTGC
LOC_Os06g36770
Os.6155.1.S1_at--715--10571Chr06:21661259..21661283 (25 bp)
TTCTCTTCTATTCATTGGACCGTTG
LOC_Os06g36770
Os.6155.1.S1_at--500--6531Chr06:21661337..21661361 (25 bp)
GATTTTCTTTTTGACTGGTCTGGAC
LOC_Os06g36770
Os.6155.1.S1_at--14--7671Chr06:21661420..21661444 (25 bp)
GGGTTCAAGTTCTGTGCCTGTGAAT
LOC_Os06g36770
Target Sequence 
AGGATGTTGTCGTCAATTCCTCCCTTGGGGCCAAAAGAGGCCGTTGATGCCCACAAGATGGCTTTTGTTGCTGTGACTGC
GTCCTTGTTGATTCTTTAGTACATGTGTAAATTATGTCCTAATCATCAGAAGTTTTGGTCCCAAAGGATGTGGTCGCAGT
TGCCGTACATTCCAAAGTTAGCAGTCCAAGGCACAAATCAAAGATAGAAAGGATTCATTGTGCTAATTTCTGCAGTAAAG
GACATAAGCAAATATGCATTGCAATGGGTGTATGATTATCTTTTACATGTAATGCCAATCAGACAAGGCTAATCAGTTGT
TTTAGAACAAAAATCCCTGAACAATAGATAACTCAGTTATTGTAGTTATTCTTCATTTCTCTTCTATTCATTGGACCGTT
GAAATAAGTCAGCACTAGAGTAACTGCTATTGTTTGGGATTCTTAACCAGGATGGATTTTCTTTTTGACTGGTCTGGACT
TTTTTTTGTTATGATAAAATGAGGTTATATTAGAACTATTTAGAATTTGCAAGAACGGGGTTCAAGTTCTGTGCCTGTGA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis