Browse Element(s) Details


Os.6174.1.S1_at

Description gb:AK072064.1
DB_XREF= gi:32982087
TID=Os.6174.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108O12, full insert sequence.
FL= gb:AK064069.1 gb:AK072064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2887011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28840Os.18438.1.S1_at11/115+16827979..16829065expressed protein
LOC_Os05g28840Os.54627.1.S1_at1/115+16827979..16829065expressed protein
LOC_Os05g28850NANA5+16834133..16834536hypothetical protein
LOC_Os05g28860Os.54117.1.S1_at11/115+16837937..168440343'-5' exonuclease family protein, expressed
LOC_Os05g28870Os.6174.1.S1_at11/115+16847174..16851170Mitochondrial carrier protein, expressed
LOC_Os05g28880OsAffx.4462.1.S1_at11/115+16852728..16852976hypothetical protein
LOC_Os05g28890Os.47130.4.A1_x_at1/115+16855668..16855994retrotransposon protein, putative, unclassified
LOC_Os05g28890Os.37083.2.S1_at1/115+16855668..16855994retrotransposon protein, putative, unclassified
LOC_Os05g28900NANA5+16856638..16862225retrotransposon protein, putative, unclassified
LOC_Os05g28910Os.28943.1.S1_x_at2/115+16862824..16865974retrotransposon protein, putative, unclassified
LOC_Os05g28920OsAffx.24330.2.S1_at1/115+16867880..16871004retrotransposon protein, putative, unclassified
LOC_Os05g28930OsAffx.4463.1.S1_at11/115+16873669..16879752hypothetical protein
LOC_Os05g28930OsAffx.17054.1.S1_at1/115+16873669..16879752hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0015884biological_processfolic acid transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0009507cellular_componentchloroplast
GO:0009941cellular_componentchloroplast envelope
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0008517molecular_functionfolic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6174.1.S1_at--533--1991Chr05:16850597..16850621 (25 bp)
ACTCCTGCCGCAGTAATAACATTTA
LOC_Os05g28870
Os.6174.1.S1_at--198--2071Chr05:16850615..16850639 (25 bp)
ACATTTACCAGCTTTGAGATGATTC
LOC_Os05g28870
Os.6174.1.S1_at--608--2611Chr05:16850682..16850706 (25 bp)
AACCCCAACCGCTGAAGCATTGATT
LOC_Os05g28870
Os.6174.1.S1_at--659--6931Chr05:16850746..16850770 (25 bp)
GTAGAAACCCAGTAAAACCATCCAT
LOC_Os05g28870
Os.6174.1.S1_at--449--1171Chr05:16850756..16850780 (25 bp)
AGTAAAACCATCCATGGACACCGTT
LOC_Os05g28870
Os.6174.1.S1_at--212--9771Chr05:16850818..16850842 (25 bp)
TAATGCAACAGGTAGCTACCACTGA
LOC_Os05g28870
Os.6174.1.S1_at--772--9091Chr05:16851025..16851049 (25 bp)
TGCTCCATTCATTTTATTCCTCTTT
LOC_Os05g28870
Os.6174.1.S1_at--164--10211Chr05:16851039..16851063 (25 bp)
TATTCCTCTTTTATGATTCGTTTTG
LOC_Os05g28870
Os.6174.1.S1_at--502--6551Chr05:16851053..16851077 (25 bp)
GATTCGTTTTGTGATACTGAACTCA
LOC_Os05g28870
Os.6174.1.S1_at--4--6491Chr05:16851065..16851089 (25 bp)
GATACTGAACTCAAATATGCCTTGG
LOC_Os05g28870
Os.6174.1.S1_at--654--591Chr05:16851081..16851105 (25 bp)
ATGCCTTGGAGCAGACTGGCAGTTT
LOC_Os05g28870
Target Sequence 
ACTCCTGCCGCAGTAATAACATTTACCAGCTTTGAGATGATTCACAGGTTCCTTCTTGATGTATTCCCTCCTTTACCTGA
ACAGCAACCCCAACCGCTGAAGCATTGATTGTACAATCCTTGTGCCCCTATCCATGTTGTCACTGTTGAGTAGAAACCCA
GTAAAACCATCCATGGACACCGTTTACCTTTGTTAGAAGGCTCTCCTAAAAGAGATTTTGATAATGCAACAGGTAGCTAC
CACTGAAAGCACAAATCATAGTGTAGGACAGTAATTAGCATTTCTGTGTGTATTATTACTTTTGATAGCATGCAATGAGG
AGGTATATGGGTTTAGGGCTGTGGGGACATGGTGATTTTGGTGGGGTATGTTGTCCGATGATGATGATGATGAAAAAAAA
AAAGATACTATTATGTGGATACAATAATTGCTCCATTCATTTTATTCCTCTTTTATGATTCGTTTTGTGATACTGAACTC
AAATATGCCTTGGAGCAGACTGGCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis