Browse Element(s) Details


Os.6189.1.S1_s_at

Description gb:AU166638
DB_XREF= gi:12405037
DB_XREF=AU166638
CLONE=C30395
TID=Os.6189.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6189 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2706011/11chromatin complex subunit A101, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27030Os.7860.1.S1_at9/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27030OsAffx.4696.1.S1_at1/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27040Os.54874.1.S1_at10/119+16443341..16446966GEX1, putative, expressed
LOC_Os09g27050Os.18226.1.S1_a_at11/119+16454049..16457584RSH2, putative, expressed
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed
LOC_Os09g27090OsAffx.17919.1.S1_at10/119+16483145..16485822F-box domain containing protein
LOC_Os09g27100OsAffx.17920.1.S1_at11/119+16486747..16489212F-box domain containing protein
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006346biological_processmethylation-dependent chromatin silencing
GO:0000786cellular_componentnucleosome
GO:0004386molecular_functionhelicase activity
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6189.1.S1_s_at--152--10551Chr09:16460945..16460969 (25 bp)
TTCATTCGCTCGCTGTTGCCGTCTA
LOC_Os09g27060
Os.6189.1.S1_s_at--761--10691Chr09:16460930..16460954 (25 bp)
TTGCCGTCTATGCATGCCGACCGGG
LOC_Os09g27060
Os.6189.1.S1_s_at--20--7291Chr09:16460901..16460925 (25 bp)
GTGCCTACTTCACCTGTGCTGATGA
LOC_Os09g27060
Os.6189.1.S1_s_at--402--1771Chr09:16460890..16460914 (25 bp)
ACCTGTGCTGATGAGACGATGCTTT
LOC_Os09g27060
Os.6189.1.S1_s_at--893--5991Chr09:16460878..16460902 (25 bp)
GAGACGATGCTTTTGTGATATACAA
LOC_Os09g27060
Os.6189.1.S1_s_at--127--9751Chr09:16460842..16460866 (25 bp)
TAATTGACTGACTGGGCGTTGCACT
LOC_Os09g27060
Os.6189.1.S1_s_at--1011--5091Chr09:16460822..16460846 (25 bp)
GCACTTGCACCTACTGACTAGGAGT
LOC_Os09g27060
Os.6189.1.S1_s_at--888--7331Chr09:16460779..16460803 (25 bp)
GTGCACTGTTATAGGCTCAGCTGCT
LOC_Os09g27060
Os.6189.1.S1_s_at--987--871Chr09:16460739..16460763 (25 bp)
AGGCCAGAAGCCTTTTCCAGCAAGC
LOC_Os09g27060
Os.6189.1.S1_s_at--390--2931Chr09:16460709..16460733 (25 bp)
AAGGAAGTGGTTTTTGTCATGATAC
LOC_Os09g27060
Os.6189.1.S1_s_at--495--6471Chr09:16460689..16460713 (25 bp)
GATACAATTGTCTACCCAGCTTATG
LOC_Os09g27060
Target Sequence 
TTCATTCGCTCGCTGTTGCCGTCTATGCATGCCGACCGGGTGGGGTGCCTACTTCACCTGTGCTGATGAGACGATGCTTT
TGTGATATACAATATCCCCCAAGTAATTGACTGACTGGGCGTTGCACTTGCACCTACTGACTAGGAGTAGGAGGTGATGT
AGTAGTGTGCACTGTTATAGGCTCAGCTGCTGGAATTCATTTTGCAAGGCCAGAAGCCTTTTCCAGCAAGCCTGTGCAAG
GAAGTGGTTTTTGTCATGATACAATTGTCTACCCAGCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6189.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis