Browse Element(s) Details


Os.6197.1.S1_at

Description gb:AK070093.1
DB_XREF= gi:32980117
TID=Os.6197.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041M10, full insert sequence.
FL= gb:AK070093.1 gb:AK060009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1752011/11CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17460Os.38428.1.S1_at11/113+9687259..9689143IN2-1 protein, putative, expressed
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein
LOC_Os03g17570Os.51433.1.S1_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S2_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S1_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006661biological_processphosphatidylinositol biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0008444molecular_functionCDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0017169molecular_functionCDP-alcohol phosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6197.1.S1_at--1039--10651Chr03:9712764..9712788 (25 bp)
TTCCGGCATCGCATTGCTTTATGTA
LOC_Os03g17520
Os.6197.1.S1_at--455--10311Chr03:9712747..9712771 (25 bp)
TTTATGTATCAGCTGGACTTGCCAT
LOC_Os03g17520
Os.6197.1.S1_at--81--4331Chr03:9712726..9712750 (25 bp)
CCATATGGTCCCTAGTGGTGTACAT
LOC_Os03g17520
Os.6197.1.S1_at--516--10771Chr03:9712559..9712583 (25 bp)
TTGAGATCCTCAGCTACTTACGCAT
LOC_Os03g17520
Os.6197.1.S1_at--978--4931Chr03:9712538..9712562 (25 bp)
GCATTGTCTCAGTTTGGCGGATTAG
LOC_Os03g17520
Os.6197.1.S1_at--334--10451Chr03:9712517..9712541 (25 bp)
TTAGTTGCTAAGTTGCTGTGCCTGC
LOC_Os03g17520
Os.6197.1.S1_at--859--8671Chr03:9712501..9712525 (25 bp)
TGTGCCTGCAAGATCTCCGTAGAAA
LOC_Os03g17520
Os.6197.1.S1_at--1095--10091Chr03:9712454..9712478 (25 bp)
TATGTTGCCCGGGTGATTACTTCTT
LOC_Os03g17520
Os.6197.1.S1_at--1124--1551Chr03:9712425..9712449 (25 bp)
AGCTATTTTCAGAGCCTATCACGGC
LOC_Os03g17520
Os.6197.1.S1_at--871--10151Chr03:9712409..9712433 (25 bp)
TATCACGGCTCGAGTGTTGGACACT
LOC_Os03g17520
Os.6197.1.S1_at--607--7751Chr03:9712222..9712246 (25 bp)
GGTGTTCTTGTTGTGCATTTGAGCC
LOC_Os03g17520
Target Sequence 
TTCCGGCATCGCATTGCTTTATGTATCAGCTGGACTTGCCATATGGTCCCTAGTGGTGTACATGAGAAAGATATGGCGGA
TACTTCTAAAATAGCCGTAGCACATAGTGTAATAGAAGGAACAGGAGCAAGCCAGCAAGGTGATATTACATTTCAAGAGC
ATACAATTTTTGAACTGCGGAGTTGATTGATGGACCTAGAATTGGTTGAGATCCTCAGCTACTTACGCATTGTCTCAGTT
TGGCGGATTAGTTGCTAAGTTGCTGTGCCTGCAAGATCTCCGTAGAAACAAAAAACATAGTAGCAAGTAGTATGTTGCCC
GGGTGATTACTTCTTCGAAAGCTATTTTCAGAGCCTATCACGGCTCGAGTGTTGGACACTGGGTGTAATGATCTGCAAAA
CTGAAAAATGCAGAAGATTGTAACCGTATACGAATACAAAACCATGAGGTTTGAGTGTGTGACTCTGGGGTTTCTATAGT
TTCTACCATTGTAAGTTTACCCATATGATATGTCAGAAGCGAACATTATTCTTTGGACAAGTGGTGTTCTTGTTGTGCAT
TTGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis