Browse Element(s) Details


Os.6199.3.S1_at

Description gb:NM_191151.1
DB_XREF= gi:34909385
GEN=P0439E07.6
TID=Os.6199.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E07.6 (P0439E07.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0439E07.6 (P0439E07.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g538905/11RNA methyltransferase, TrmH family, group 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein
LOC_Os01g53870OsAffx.24046.1.S1_at11/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.2.S1_x_at4/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.7.S1_x_at3/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.3.S1_x_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870Os.53053.1.S1_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6199.3.S1_at--208--3911Chr01:31312050..31312074 (25 bp)
CTGGATAGCTTTGGATGAGGTCATG
LOC_Os01g53890
Os.6199.3.S1_at--530--6151Chr01:31312034..31312058 (25 bp)
GAGGTCATGGATCCTCAGAACCTAG
LOC_Os01g53890
Os.6199.3.S1_at--533--7971Chr01:31312026..31312050 (25 bp)
GGATCCTCAGAACCTAGGAGCCATA
LOC_Os01g53890
Os.6199.3.S1_at--705--8091Chr01:31312010..31312034 (25 bp)
GGAGCCATAATTAGATCTGCCTACT
LOC_Os01g53890
Os.6199.3.S1_at--301--4431Chr01:31311992..31312016 (25 bp)
GCCTACTTCTTTGGCGCGGAAGGTG
LOC_Os01g53890
Os.6199.3.S1_at--396--6011NONE
GAGAGCTTGAATAGCATTGCTGAGC
NONE
Os.6199.3.S1_at--167--4951Chr01:31308825..31308849 (25 bp)
GCATTGCTGAGCTGTCAACTGTAAA
NONE
Os.6199.3.S1_at--543--4731Chr01:31308815..31308839 (25 bp)
GCTGTCAACTGTAAAACACTGGTTT
NONE
Os.6199.3.S1_at--222--2171Chr01:31308800..31308824 (25 bp)
ACACTGGTTTGACCTGATAGATCAT
NONE
Os.6199.3.S1_at--981--6491Chr01:31308785..31308809 (25 bp)
GATAGATCATAAGTACACCATCCTT
NONE
Os.6199.3.S1_at--619--3371Chr01:31308770..31308794 (25 bp)
CACCATCCTTATACTGTTTTTCAAC
NONE
Target Sequence 
CTGGATAGCTTTGGATGAGGTCATGGATCCTCAGAACCTAGGAGCCATAATTAGATCTGCCTACTTCTTTGGCGCGGAAG
GTGTTGTGTTATGTGCTAAGAACTCTGCTCCATTAAGTGGTGTAGTGAGCAAAGCTAGTGCAGGCTCACTTGAGTTGATC
GAACTGCTCTCCTGTAGGAACATGATGCAGTTTTTATCTTCATCGGCTGAAAATGGGTGGCGAGTTCTTGGTGGTACTGT
TGCTCCTAAAGCTATACCTCTATCTGAAGTTGTGCCAGGAGAACCAACAATCCTTGTGTTGGGTAGTGAAGGCACTGGTT
TGAGGCCCCTGGTTGAGCGATCCTGCACACATTTGGTCAGAATTCCGGGTAATGTTGATGGATCTTTTGTAGGAGCAGAT
ACAGACACAGATGGAGGGGAAGAAGGTGATAATTATTCAGGTAACCAAGATATGAAATCATTCCTTGCAGTGGAGAGCTT
GAATAGCATTGCTGAGCTGTCAACTGTAAAACACTGGTTTGACCTGATAGATCATAAGTACACCATCCTTATACTGTTTT
TCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6199.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis