Browse Element(s) Details


Os.6206.1.S1_x_at

Description gb:AK100964.1
DB_XREF= gi:32986173
TID=Os.6206.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142C08, full insert sequence.
FL= gb:AK100964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3733011/11Ent-kaurene oxidase, putative, expressed
LOC_Os06g373645/11Ent-kaurene oxidase, putative, expressed
LOC_Os06g373001/11Ent-kaurene oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37300Os.57506.1.S1_at10/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.1.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.2.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37310OsAffx.5035.1.S1_at11/116+22030571..22033705hypothetical protein
LOC_Os06g37310Os.20851.1.A1_x_at1/116+22030571..22033705hypothetical protein
LOC_Os06g37310OsAffx.19815.1.S1_at1/116+22030571..22033705hypothetical protein
LOC_Os06g37320NANA6+22037357..22040270expressed protein
LOC_Os06g37330Os.6206.1.S1_x_at11/116+22047649..22056760Ent-kaurene oxidase, putative, expressed
LOC_Os06g37330Os.6206.2.S1_x_at5/116+22047649..22056760Ent-kaurene oxidase, putative, expressed
LOC_Os06g37340Os.39511.1.A1_at2/116+22065285..22071259retrotransposon protein, putative, unclassified
LOC_Os06g37364Os.6206.2.S1_x_at11/116+22072900..22081488Ent-kaurene oxidase, putative, expressed
LOC_Os06g37364OsAffx.15795.1.S1_at11/116+22072900..22081488Ent-kaurene oxidase, putative, expressed
LOC_Os06g37364Os.6206.1.S1_x_at5/116+22072900..22081488Ent-kaurene oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009809biological_processlignin biosynthesis
GO:0005792cellular_componentmicrosome
GO:0009707cellular_componentchloroplast outer membrane
GO:0004497molecular_functionmonooxygenase activity
GO:0010241molecular_functionent-kaurene oxidase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6206.1.S1_x_at--688--311Chr06:22049941..22049965 (25 bp)
ATACCTCCGAGGTTCGTCAACGAGG
LOC_Os06g37330
Os.6206.1.S1_x_at--728--7071Chr06:22049926..22049950 (25 bp)
GTCAACGAGGACACCATGCTCGCCG
LOC_Os06g37330
Os.6206.1.S1_x_at--11--3371Chr06:22048094..22048113 (20 bp)
CACCGAGATGGTGATCAACCTGTAT
LOC_Os06g37330
Os.6206.1.S1_x_at--588--3251Chr06:22048079..22048103 (25 bp)
CAACCTGTATGGGTGCAACATGAAC
LOC_Os06g37330
Os.6206.1.S1_x_at--697--2892Chr06:22047994..22048018 (25 bp)
AAGGTGGCGGACATGTACAAGACGA
LOC_Os06g37330
Os.6206.1.S1_x_at--1049--7034Chr06:22089297..22089321 (25 bp)
GTACAAGACGATGGCGTTCGGCGCC
NONE
Os.6206.1.S1_x_at--752--1072Chr06:22047938..22047962 (25 bp)
AGGGAGCCTGCAGGCGACTCACATC
LOC_Os06g37330
Os.6206.1.S1_x_at--654--4332Chr06:22089220..22089244 (25 bp)
CCATCGCGCGCTTCGTGCAGGAGTT
NONE
Os.6206.1.S1_x_at--254--1473Chr06:22073195..22073219 (25 bp)
AGAAGGTGGACACCGTGCAGCTCAC
LOC_Os06g37364
Os.6206.1.S1_x_at--108--5412Chr06:22073099..22073123 (25 bp)
GAAGCTGTTGCTCGTTGAATAATGA
LOC_Os06g37364
Os.6206.1.S1_x_at--1063--5131Chr06:22047695..22047719 (25 bp)
GCAAAATCTCCATGCTTTGTTCTGG
LOC_Os06g37330
Target Sequence 
ATACCTCCGAGGTTCGTCAACGAGGACACCATGCTCGCCGGCTACGATGTCCCCGCCGGCACCGAGATGGTGATCAACCT
GTATGGGTGCAACATGAACAAGAAGGAGTGGGAGTCGCCGGAGGAGTGGGCGCCGGAGAGGTTCGCCGGTGGGAGGTTCA
AGGTGGCGGACATGTACAAGACGATGGCGTTCGGCGCCGGGAGGAGGGTCTGCGCAGGGAGCCTGCAGGCGACTCACATC
GCGTGCGCCGCCATCGCGCGCTTCGTGCAGGAGTTTGGGTGGAGGCTGAGGGAGGGTGACGAGGAGAAGGTGGACACCGT
GCAGCTCACCGCCTACAAGCTCCACCCGCTTCATGTCCACCTCACGCCCAGAGGAAGGATGTGAACCATTATATTCATTG
GAAGCTGTTGCTCGTTGAATAATGATATATAGTTATCTTTGAGATGTATTTACTATTAGCAAAATCTCCATGCTTTGTTC
TGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6206.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis