Browse Element(s) Details

Os.6206.2.S1_x_at

Description

gb:AK066285.1
DB_XREF= gi:32976303
TID=Os.6206.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068N08, full insert sequence.
FL= gb:AK066285.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g37364	11/11	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37330	5/11	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300	1/11	Ent-kaurene oxidase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g37330	Os.6206.1.S1_x_at	11/11	6	+	22047649..22056760	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37330	Os.6206.2.S1_x_at	5/11	6	+	22047649..22056760	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37340	Os.39511.1.A1_at	2/11	6	+	22065285..22071259	retrotransposon protein, putative, unclassified
LOC_Os06g37364	Os.6206.2.S1_x_at	11/11	6	+	22072900..22081488	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37364	OsAffx.15795.1.S1_at	11/11	6	+	22072900..22081488	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37364	Os.6206.1.S1_x_at	5/11	6	+	22072900..22081488	Ent-kaurene oxidase, putative, expressed
LOC_Os06g37390	OsAffx.27975.1.S1_at	8/11	6	+	22097433..22097888	hypothetical protein
LOC_Os06g37400	Os.46012.2.S1_x_at	6/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	Os.46012.3.S1_x_at	5/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	Os.46012.3.S1_at	4/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	Os.27088.1.A1_x_at	2/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	Os.54691.1.S1_x_at	1/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified
LOC_Os06g37400	OsAffx.28013.1.S1_at	1/11	6	+	22102579..22112818	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006118	biological_process	electron transport
GO:0009686	biological_process	gibberellic acid biosynthesis
GO:0009699	biological_process	phenylpropanoid biosynthesis
GO:0009740	biological_process	gibberellic acid mediated signaling
GO:0009809	biological_process	lignin biosynthesis
GO:0005792	cellular_component	microsome
GO:0009707	cellular_component	chloroplast outer membrane
GO:0004497	molecular_function	monooxygenase activity
GO:0010241	molecular_function	ent-kaurene oxidase activity
GO:0019825	molecular_function	oxygen binding
GO:0046409	molecular_function	p-coumarate 3-hydroxylase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.6206.2.S1_x_at--343--261	2	Chr06:22089395..22089419 (25 bp)	AACCTGTACGGGTGCAACATGAACA	NONE
Os.6206.2.S1_x_at--820--937	1	Chr06:22073342..22073366 (25 bp)	TCGAGGTGGCGGACATGTACAAGAC	LOC_Os06g37364
Os.6206.2.S1_x_at--1048--703	4	Chr06:22089297..22089321 (25 bp)	GTACAAGACGATGGCGTTCGGCGCC	NONE
Os.6206.2.S1_x_at--295--905	2	Chr06:22073276..22073300 (25 bp)	TGCAGGCGACTCACATCGCGTGCGC	LOC_Os06g37364
Os.6206.2.S1_x_at--253--147	3	Chr06:22073195..22073219 (25 bp)	AGAAGGTGGACACCGTGCAGCTCAC	LOC_Os06g37364
Os.6206.2.S1_x_at--427--963	1	Chr06:22073149..22073173 (25 bp)	TCATGTCCACCTCACGCGCAGAGGA	LOC_Os06g37364
Os.6206.2.S1_x_at--751--1019	3	Chr06:22073110..22073134 (25 bp)	TATATTCATTGGAAGCTGTTGCTCG	LOC_Os06g37364
Os.6206.2.S1_x_at--107--541	2	Chr06:22073099..22073123 (25 bp)	GAAGCTGTTGCTCGTTGAATAATGA	LOC_Os06g37364
Os.6206.2.S1_x_at--153--149	2	Chr06:22089009..22089033 (25 bp)	AGCAAAATCTCCATGCTTTGTTATG	NONE
Os.6206.2.S1_x_at--1155--349	1	Chr06:22072990..22073014 (25 bp)	CATGGACTATATTTCTTTTATCAAA	LOC_Os06g37364
Os.6206.2.S1_x_at--319--879	1	Chr06:22072948..22072972 (25 bp)	TGTTACTTGTTTACTTATTCTTTGT	LOC_Os06g37364

Target Sequence

AACCTGTACGGGTGCAACATGAACAGGAAGGAGTGGGAGTCGCCGGAGGAGTGGGTGCCGGAGAGGTTCGCCGGCGGGAG
GCTCGAGGTGGCGGACATGTACAAGACGATGGCGTTCGGCGCCGGGAGGAGGGCCTGCGCGGGGAGCCTGCAGGCGACTC
ACATCGCGTGCGCCGCCGTCGCGCGCTTCGTGCAGGAGTTCGGGTGGAGGCTGAGGGAGGGTGACGAGGAGAAGGTGGAC
ACCGTGCAGCTCACCGCCTACAAGCTCCACCCGCTTCATGTCCACCTCACGCGCAGAGGAAGGATGTGAACCATTATATT
CATTGGAAGCTGTTGCTCGTTGAATAATGATATATAGTTATCTTTGAGATGTATTTACTATTAGCAAAATCTCCATGCTT
TGTTATGGATAGGAGAAAACATATTATAATATATCATGGACTATATTTCTTTTATCAAATATGGTTGTATATAACTTGTT
ACTTGTTTACTTATTCTTTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis