Browse Element(s) Details


Os.6244.1.S1_x_at

Description gb:AK109161.1
DB_XREF= gi:32994370
TID=Os.6244.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G08, full insert sequence.
FL= gb:AK109161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1374011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13710OsAffx.22940.2.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.3.S1_x_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.1.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.18.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.3.S1_x_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.2.S1_at7/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.31552.2.S1_at1/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13720Os.10452.1.S1_at11/113+7409707..7412707expressed protein
LOC_Os03g13730OsAffx.3231.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730Os.8640.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730OsAffx.28716.1.S1_s_at1/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13740Os.6244.1.S1_x_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13740Os.6244.1.S1_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13750Os.10466.1.S1_at10/113+7425053..7428664expressed protein
LOC_Os03g13750OsAffx.12845.1.S1_at9/113+7425053..7428664expressed protein
LOC_Os03g13760Os.18639.1.S1_at11/113+7428850..7432091Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os03g13770Os.27347.1.S1_a_at11/113+7432674..7436825expressed protein
LOC_Os03g13780Os.35344.18.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780Os.35344.3.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780OsAffx.22940.5.S1_x_at3/113+7437731..7443905transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6244.1.S1_x_at--398--4091Chr03:7419960..7419984 (25 bp)
CGACGCAATGCTCGCCTCGGAGGAA
LOC_Os03g13740
Os.6244.1.S1_x_at--666--8392Chr01:33717259..33717397 (25 bp)
GGCCCTCGTGAAGAAGATGTTCCGC
NONE
Os.6244.1.S1_x_at--788--971Chr03:7419700..7419724 (25 bp)
AGGAGAAGGCCACTGAGCTGCTCAA
LOC_Os03g13740
Os.6244.1.S1_x_at--632--1592Chr06:7709422..7709838 (25 bp)
AGCTGCTCAAGATGCTCAACAAGCA
NONE
Os.6244.1.S1_x_at--909--10511Chr03:7419626..7419650 (25 bp)
TTCAGAGGGCTCAATAGGCTGTCAT
LOC_Os03g13740
Os.6244.1.S1_x_at--849--8331Chr03:7419610..7419634 (25 bp)
GGCTGTCATGAATTGAGATCAGTGT
LOC_Os03g13740
Os.6244.1.S1_x_at--1077--6031Chr03:7419596..7419620 (25 bp)
GAGATCAGTGTTCAGAATCATTGTA
LOC_Os03g13740
Os.6244.1.S1_x_at--399--10051Chr03:7419567..7419591 (25 bp)
TAGTTGCGAGCAGCTAGGAAATGCA
LOC_Os03g13740
Os.6244.1.S1_x_at--437--7671Chr03:7419522..7419546 (25 bp)
GGGATTTTTGCGGATGTGCTTTCCA
LOC_Os03g13740
Os.6244.1.S1_x_at--1046--7991Chr03:7419511..7419535 (25 bp)
GGATGTGCTTTCCATGCTAGATTGT
LOC_Os03g13740
Os.6244.1.S1_x_at--534--10671Chr03:7419464..7419488 (25 bp)
TTCCTACTTTCCTCACTGTAAATAT
LOC_Os03g13740
Target Sequence 
CGACGCAATGCTCGCCTCGGAGGAAGGCCGCGCGAGCGCGCGGGGCCACGCCCTCGCAATGCCGGCCCTCGTGAAGAAGA
TGTTCCGCGTGTCCGACGTGGCCACCGAGCTCGCCGTGTCGGCGATGTGGNCGGCTCGGCTGCAAGGCCTCCTCCGGCGA
CGANGGAGGCCGCCGCGACGGGGTGCCTGGTCGAGGCGCTGCGTGTGGGCGCGTTCCAGANAGCTTCTCCTCCTCCTGCA
GGTGGGCTGCNAGGGACGCGACCAAGGAGAAGGCCACTGAGCTGCTCAAGATGCTCAACAAGCACAAAGGGTTGGGGGAG
TGTGTCGACGCTGTNGGATTTCAGAGGGCTCAATAGGCTGTCATGAATTGAGATCAGTGTTCAGAATCATTGTAAAAATA
GTTGCGAGCAGCTAGGAAATGCAGATTGTAAAAATAGTTGATGGGGATTTTTGCGGATGTGCTTTCCATGCTAGATTGTN
NATCTAATTGCAAAAACAAGTTTCCTACTTTCCTCACTGTAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6244.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis