Browse Element(s) Details


Os.6269.1.S1_at

Description gb:AK071041.1
DB_XREF= gi:32981064
TID=Os.6269.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081F02, full insert sequence.
FL= gb:AK071041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1909011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19050Os.35344.18.S1_x_at10/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050Os.35344.3.S1_x_at9/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_at5/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_x_at4/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19060NANA3+10652230..10655534hypothetical protein
LOC_Os03g19070Os.10091.1.S1_at11/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_s_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.2.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19080Os.8876.1.S1_at11/113+10663346..10667807expressed protein
LOC_Os03g19090Os.6269.1.S1_at11/113+10671364..10672937expressed protein
LOC_Os03g19104OsAffx.25139.1.S1_at11/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.2.S1_x_at7/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.3.S1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.27088.1.A1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.10263.1.S1_at2/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.45902.1.A1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.10222.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.54691.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.22442.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19120OsAffx.12932.1.S1_at11/113+10686231..10692046P protein C-terminus containing protein
LOC_Os03g19120Os.57514.1.S1_x_at1/113+10686231..10692046P protein C-terminus containing protein
LOC_Os03g19129NANA3+10694603..10694737NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6269.1.S1_at--216--2931Chr03:10672516..10672540 (25 bp)
AAGGCAAACGCCTCATCGGCCAAAA
LOC_Os03g19090
Os.6269.1.S1_at--622--9331Chr03:10672586..10672610 (25 bp)
TCGCTGTTGCCCGTTAATTAATTAA
LOC_Os03g19090
Os.6269.1.S1_at--880--4591Chr03:10672631..10672655 (25 bp)
GCGAAGCTTGTACTACTTTGTTTTT
LOC_Os03g19090
Os.6269.1.S1_at--119--10371Chr03:10672661..10672685 (25 bp)
TTTTCCTTTTTCTGCCTTCGATTTG
LOC_Os03g19090
Os.6269.1.S1_at--961--10611Chr03:10672677..10672701 (25 bp)
TTCGATTTGTGCTTGGGTTTTGTAT
LOC_Os03g19090
Os.6269.1.S1_at--1142--7931Chr03:10672720..10672744 (25 bp)
GGATAACAGGATTCCTCCCTTCGTT
LOC_Os03g19090
Os.6269.1.S1_at--701--1231Chr03:10672767..10672791 (25 bp)
AGTTGTCACAGGTCAGTCACATCAA
LOC_Os03g19090
Os.6269.1.S1_at--473--4571Chr03:10672820..10672844 (25 bp)
GCGCGAAGCAGAATGCCTGGTGATT
LOC_Os03g19090
Os.6269.1.S1_at--1109--4291Chr03:10672858..10672882 (25 bp)
CCTACCCATTCTTGTGTGCATGGAA
LOC_Os03g19090
Os.6269.1.S1_at--328--831Chr03:10672877..10672901 (25 bp)
ATGGAACTATCATCTCAACCCTGTA
LOC_Os03g19090
Os.6269.1.S1_at--85--3751Chr03:10672890..10672914 (25 bp)
CTCAACCCTGTACTACTCGTAGTAA
LOC_Os03g19090
Target Sequence 
AAGGCAAACGCCTCATCGGCCAAAAAAACTCCAAAATAGAGAGCAAATGGGAAGAGCTTAACCAAGTTNTTCGCTGTTGC
CCGTTAATTAATTAATATTATTATTTCCTGTGTAAGCGAAGCTTGTACTACTTTGTTTTTTTTTCTTTTCCTTTTTCTGC
CTTCGATTTGTGCTTGGGTTTTGTATAGGCAGGCAGCGTGAGAGGGATAACAGGATTCCTCCCTTCGTTCGGAGGCGTTG
GTGGTAGTAGTAGTTGTCACAGGTCAGTCACATCAACTGGAAACATCAGCGGTTGGTAAATGTGGCGCGAAGCAGAATGC
CTGGTGATTTTTTTCCCCTTCCCCTACCCATTCTTGTGTGCATGGAACTATCATCTCAACCCTGTACTACTCGTAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis