Browse Element(s) Details


Os.6291.1.S1_x_at

Description gb:AK108191.1
DB_XREF= gi:32993400
TID=Os.6291.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C02, full insert sequence.
FL= gb:AK108191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4760011/11Pathogenesis-related protein 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590OsAffx.5138.1.S1_at11/116+28817164..28818182AP2 domain containing protein, expressed
LOC_Os06g47600Os.6291.1.S1_x_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47600Os.6291.1.S1_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47610NANA6+28829642..28830505transposon protein, putative, unclassified
LOC_Os06g47620Os.54966.1.S1_at11/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47620OsAffx.19893.1.S1_at1/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47630NANA6+28845114..28845938hypothetical protein
LOC_Os06g47640Os.53014.1.S1_at11/116+28846315..28847024EF hand family protein, expressed
LOC_Os06g47660Os.11189.2.S1_at11/116+28850713..28856262expressed protein
LOC_Os06g47660OsAffx.28159.1.S1_at10/116+28850713..28856262expressed protein
LOC_Os06g47660Os.52494.1.S1_at1/116+28850713..28856262expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6291.1.S1_x_at--521--2211Chr06:28825434..28825458 (25 bp)
ACAACCGCGTCGTCGGATGCCGCAG
LOC_Os06g47600
Os.6291.1.S1_x_at--963--4631Chr06:28825535..28825559 (25 bp)
GCGTACTCCCGGCTGTTCAAGACGG
LOC_Os06g47600
Os.6291.1.S1_x_at--1029--8331Chr06:28825545..28825569 (25 bp)
GGCTGTTCAAGACGGCGTGCCCCAA
LOC_Os06g47600
Os.6291.1.S1_x_at--1058--7771Chr06:28825622..28825646 (25 bp)
GGTGCGTCCTACATCGTCACCTTCT
LOC_Os06g47600
Os.6291.1.S1_x_at--475--4831Chr06:28825659..28825683 (25 bp)
GCTAGACAGCGTAACCCAACCCAAG
LOC_Os06g47600
Os.6291.1.S1_x_at--816--1631Chr06:28825666..28825690 (25 bp)
AGCGTAACCCAACCCAAGCAAAGAT
LOC_Os06g47600
Os.6291.1.S1_x_at--78--7051Chr06:28825669..28825693 (25 bp)
GTAACCCAACCCAAGCAAAGATTTG
LOC_Os06g47600
Os.6291.1.S1_x_at--304--2451Chr06:28825710..28825734 (25 bp)
AACAATGGCAAAGACGCTAGCTTTA
LOC_Os06g47600
Os.6291.1.S1_x_at--1151--3271Chr06:28825718..28825742 (25 bp)
CAAAGACGCTAGCTTTAGTCATGGT
LOC_Os06g47600
Os.6291.1.S1_x_at--610--1831Chr06:28825723..28825747 (25 bp)
ACGCTAGCTTTAGTCATGGTGCATG
LOC_Os06g47600
Os.6291.1.S1_x_at--121--6771Chr06:28825981..28826005 (25 bp)
GTTCAATTTCAGCTGGTTTTGGTGC
LOC_Os06g47600
Target Sequence 
ACAACCGCGTCGTCGGATGCCGCAGCGCCTGCGCCGCCTACGGNGCNNCGCAGTACTGCTGCACCGGCCAGTTCGGGAGC
CCGCAGCAGTGCAANGCCGACGGCGTACTCCCGGCTGTTCAAGACGGCGTGCCCCAAGGCCTACTCCTACGCCTACGACG
ACCCGACCTCCATCCTCACCTGCTCCGCCGGTGCGTCCTACATCGTCACCTTCTGCCCGCACCGCCGCTAGACAGCGTAA
CCCAACCCAAGCAAAGATTTGCTTCCCACTCATCATGAACAATGGCAAAGACGCTAGCTTTAGTCATGGTGCATGGCATT
GTTGTTGCTGATGTTCTTGGTTCTTCTTGATGCTGTTGATGCGTCATGTATTAGTGCCGTAATAATAATAATACTATTAT
TAGCATTAAACCAGTGGGTTGTACTGTAGTTTTAGCGGTTGGTTTGGGTATAACGTNAGGANATNTGGTGGTCTACCNCT
GGTAGGCCGGGAAAGGAGGAGGTATATGGGTATATGGAANAACTGAAACTAGTAATATGTTTGTTTCCGTTCAATTTCAG
CTGGTTTTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6291.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis