Browse Element(s) Details


Os.6305.1.S1_at

Description gb:AK101681.1
DB_XREF= gi:32986890
TID=Os.6305.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058K22, full insert sequence.
FL= gb:AK102785.1 gb:AK101681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3339010/11Regulator of chromosome condensation family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33340Os.9414.1.S1_at11/118+20664175..20668866UV excision repair protein Rad23 containing protein, expressed
LOC_Os08g33350Os.8489.1.A1_at11/118+20669715..20672354RNA recognition motif family protein, expressed
LOC_Os08g33360Os.50043.1.A1_at1/118+20675844..20678311transposon protein, putative, Mariner sub-class
LOC_Os08g33370Os.6323.2.S1_a_at11/118+20679661..2068278814-3-3, putative, expressed
LOC_Os08g33380Os.23161.2.S1_x_at11/118+20684392..20687602expressed protein
LOC_Os08g33380Os.23161.1.S1_at10/118+20684392..20687602expressed protein
LOC_Os08g33390Os.6305.1.S1_at10/118+20688096..20692046Regulator of chromosome condensation family protein, expressed
LOC_Os08g33400Os.50792.1.S1_x_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_s_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_at8/118+20695407..20698492expressed protein
LOC_Os08g33410OsAffx.17312.1.S1_x_at10/118+20709359..20710315hypothetical protein
LOC_Os08g33410OsAffx.20313.1.S1_x_at3/118+20709359..20710315hypothetical protein
LOC_Os08g33420Os.14960.1.S1_at11/118+20715184..20720165Agenet domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6305.1.S1_at--149--6251NONE
GATGGACGAATGTTTTCTTACGGTA
NONE
Os.6305.1.S1_at--449--1931Chr08:20688642..20688666 (25 bp)
ACGGTAGAGGTGACCATGGCCGTCT
LOC_Os08g33390
Os.6305.1.S1_at--31--3551Chr08:20688479..20688503 (25 bp)
CATCGCGACATGGACGGAGGCAGAC
LOC_Os08g33390
Os.6305.1.S1_at--1004--5031Chr08:20688460..20688484 (25 bp)
GCAGACGAGTAATCGATCGCCTCTT
LOC_Os08g33390
Os.6305.1.S1_at--1103--9371Chr08:20688448..20688472 (25 bp)
TCGATCGCCTCTTGGTTTTTTAAAG
LOC_Os08g33390
Os.6305.1.S1_at--554--4371Chr08:20688423..20688447 (25 bp)
CCAAATCCCGGAGCTGGTACAGATA
LOC_Os08g33390
Os.6305.1.S1_at--472--331Chr08:20688398..20688422 (25 bp)
ATACTACCGAGTACTTTTCGTGCAA
LOC_Os08g33390
Os.6305.1.S1_at--467--3051Chr08:20688299..20688323 (25 bp)
AATCGGGATTTTTCTTTCTGCTGAG
LOC_Os08g33390
Os.6305.1.S1_at--480--3091Chr08:20688271..20688295 (25 bp)
AATAAGCATGGCCATCTCATCTTCT
LOC_Os08g33390
Os.6305.1.S1_at--500--10611Chr08:20688175..20688199 (25 bp)
TTGTGACGTAATCTGTTCCTTTCTT
LOC_Os08g33390
Os.6305.1.S1_at--1099--10331Chr08:20688117..20688141 (25 bp)
TTTATCCTCCCGCAAAGTTAATTAT
LOC_Os08g33390
Target Sequence 
GATGGACGAATGTTTTCTTACGGTAGAGGTGACCATGGCCGTCTGGGCTACGGCAGGAAGGTCACGACGGGCCACCCGAT
GGAAGTCCCCATCGACCTGCCGCCGCCGGGAACCAGCGGCGGCGACTCCGGCGGGCAATGGCAGGCGAGGTACGTCGCCT
GCGGCGGGAGGCACACGCTGGCCATCGCGACATGGACGGAGGCAGACGAGTAATCGATCGCCTCTTGGTTTTTTAAAGCC
AAATCCCGGAGCTGGTACAGATAATACTACCGAGTACTTTTCGTGCAATAAGACAAGGCTAATGTTAAAATGATCTCTGA
GATGTATGAGCTGAGTGATGAATAAACAAGGAGGAATAAAAGAATCGGGATTTTTCTTTCTGCTGAGATAAATAAGCATG
GCCATCTCATCTTCTCGCTATGAATGATTTCCAAGTGAATTCATTACCCTAGGGAAGGAAAAACAAAAGTTGAGAAATGA
CAACTTTTGTGACGTAATCTGTTCCTTTCTTCTTTCCTCCCAAACTTATTTTTAAATATTATTTTTTATCCTCCCGCAAA
GTTAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis