Browse Element(s) Details


Os.6347.1.S1_at

Description gb:AK071402.1
DB_XREF= gi:32981425
TID=Os.6347.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092G05, full insert sequence.
FL= gb:AK071402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2629011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26240OsAffx.30013.5.S1_x_at2/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_x_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26250OsAffx.422.1.S1_at1/112+15414849..15415337retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g26260NANA2+15416714..15416974hypothetical protein
LOC_Os02g26270NANA2+15419622..15423088retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g26280OsAffx.24431.1.S1_at9/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.1.S1_x_at3/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.3.S1_at2/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.31892.5.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26280OsAffx.20733.1.S1_x_at1/112+15423739..15429165hypothetical protein
LOC_Os02g26290Os.6347.1.S1_at11/112+15430736..15431761expressed protein
LOC_Os02g26300Os.51701.1.S1_at11/112+15441358..15445923expressed protein
LOC_Os02g26310OsAffx.2759.1.S1_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26310OsAffx.2759.1.S1_x_at11/112+15447076..15447835hypothetical protein
LOC_Os02g26320Os.55769.1.S1_at11/112+15453155..15454310Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6347.1.S1_at--955--2891Chr02:15431134..15431158 (25 bp)
AAGGTCAAGCCGAAGTCCAGCGACG
LOC_Os02g26290
Os.6347.1.S1_at--909--3191Chr02:15431076..15431100 (25 bp)
CAAAGGCAACCGATGTCCCTAAGTA
LOC_Os02g26290
Os.6347.1.S1_at--1098--9391Chr02:15431018..15431042 (25 bp)
TCGTCCGTCCACGTACAAGTTTGGA
LOC_Os02g26290
Os.6347.1.S1_at--46--31Chr02:15430993..15431017 (25 bp)
ATTGGATAGCGCAATAACCACGCAC
LOC_Os02g26290
Os.6347.1.S1_at--750--2631Chr02:15430978..15431002 (25 bp)
AACCACGCACGGCTAGGCGTAATGT
LOC_Os02g26290
Os.6347.1.S1_at--1149--2971Chr02:15430958..15430982 (25 bp)
AATGTGTGACGACACGTACGGCGCA
LOC_Os02g26290
Os.6347.1.S1_at--571--8391Chr02:15430939..15430963 (25 bp)
GGCGCATTACCAGTCTAGTATACCA
LOC_Os02g26290
Os.6347.1.S1_at--360--10031Chr02:15430924..15430948 (25 bp)
TAGTATACCATCACCTTTGACCTGT
LOC_Os02g26290
Os.6347.1.S1_at--670--10611Chr02:15430844..15430868 (25 bp)
TTCGATCGATCGGTTGTTTCATACG
LOC_Os02g26290
Os.6347.1.S1_at--240--5431Chr02:15430820..15430844 (25 bp)
GAACCGAGTTTTGTACTGCTACTAA
LOC_Os02g26290
Os.6347.1.S1_at--296--8771Chr02:15430758..15430782 (25 bp)
TGTATACGGCTGATCGATGTGCATA
LOC_Os02g26290
Target Sequence 
AAGGTCAAGCCGAAGTCCAGCGACGCCGACGAANCCGCGGCCAAGCCCGCCACGGAGCCAAAGGCAACCGATGTCCCTAA
GTAANCCGGTGGCNAAGGTCGACGCCGATCGACGCGCTCGTCCGTCCACGTACAAGTTTGGAATTGGATAGCGCAATAAC
CACGCACGGCTAGGCGTAATGTGTGACGACACGTACGGCGCATTACCAGTCTAGTATACCATCACCTTTGACCTGTACTG
CTAATTTTCAGTTTAATTTGTATTCGATCAAGTACGTGAAATTGGGTCGAGTTCGATCGATCGGTTGTTTCATACGAACC
GAGTTTTGTACTGCTACTAATTAATGTAATGGCTTATGGCTAATGCAAATATTTGCATGTATACGGCTGATCGATGTGCA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis