Browse Element(s) Details


Os.6350.1.S1_at

Description gb:AK103041.1
DB_XREF= gi:32988250
TID=Os.6350.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117F03, full insert sequence.
FL= gb:AK103041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0511011/11Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05060Os.53691.1.S1_at11/113+2445571..2447451Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05070Os.50602.1.S1_at11/113+2450381..2452132Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05080OsAffx.12735.1.S1_x_at11/113+2453439..2453983hypothetical protein
LOC_Os03g05090NANA3+2458525..2458992transposon protein, putative, unclassified
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein
LOC_Os03g05160OsAffx.24974.1.S1_x_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05160OsAffx.24974.1.S1_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05170OsAffx.24975.1.S1_at11/113+2486752..2487448hypothetical protein
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6350.1.S1_at--757--5531Chr03:2468060..2468084 (25 bp)
GACAATTGGGCCTCATGAATGGGAC
LOC_Os03g05110
Os.6350.1.S1_at--818--8991Chr03:2468075..2468099 (25 bp)
TGAATGGGACCCGTTCTTCTCTAAG
LOC_Os03g05110
Os.6350.1.S1_at--482--3991Chr03:2468086..2468110 (25 bp)
CGTTCTTCTCTAAGCCCAAGGACAA
LOC_Os03g05110
Os.6350.1.S1_at--470--7731Chr03:2468112..2468136 (25 bp)
GGTGGAGATTCTACTAATCCATCTA
LOC_Os03g05110
Os.6350.1.S1_at--234--9771Chr03:2468138..2468162 (25 bp)
TAATGCTGCCAAGAACTCCTGGAAA
LOC_Os03g05110
Os.6350.1.S1_at--57--1371Chr03:2468238..2468262 (25 bp)
AGAGAAGCTCCTTGCAAATACCTTG
LOC_Os03g05110
Os.6350.1.S1_at--970--2251Chr03:2468253..2468277 (25 bp)
AAATACCTTGCCCATATGTCAAAGA
LOC_Os03g05110
Os.6350.1.S1_at--806--751Chr03:2468268..2468292 (25 bp)
ATGTCAAAGATCCTCCAACGCAGTA
LOC_Os03g05110
Os.6350.1.S1_at--998--711Chr03:2468318..2468342 (25 bp)
ATGATCTAGCCCCTACAGGTGTAAG
LOC_Os03g05110
Os.6350.1.S1_at--652--8431Chr03:2468379..2468403 (25 bp)
GGCCTTCGAGTTGCCCTTATAAATA
LOC_Os03g05110
Os.6350.1.S1_at--589--10271Chr03:2468426..2468450 (25 bp)
TTTGCTTTGCTCAATAATCCTTTGT
LOC_Os03g05110
Target Sequence 
GACAATTGGGCCTCATGAATGGGACCCGTTCTTCTCTAAGCCCAAGGACAAGGGTGGAGATTCTACTAATCCATCTACTA
ATGCTGCCAAGAACTCCTGGAAAAACGAACAAAGAGGTCAGAACTAAAATACAGGTAGTTAGATATGTGATCGAGGAAAG
GAACTAGATATCCTCTCTAGAGAAGCTCCTTGCAAATACCTTGCCCATATGTCAAAGATCCTCCAACGCAGTAGCTCTGA
TGATCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACG
GCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCAATAATCCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis