Browse Element(s) Details


Os.6365.1.S1_at

Description gb:AK065050.1
DB_XREF= gi:32975068
TID=Os.6365.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001I17, full insert sequence.
FL= gb:AK065050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0938011/11actin binding protein family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09360Os.9147.1.S1_s_at11/115+5216276..5228055glycine-rich protein, putative, expressed
LOC_Os05g09370Os.52103.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09370Os.10656.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6365.1.S1_at--134--4991Chr05:5248211..5248235 (25 bp)
GCATGATAATCACGGCTCCCGTTGG
LOC_Os05g09380
Os.6365.1.S1_at--350--4791Chr05:5248225..5248249 (25 bp)
GCTCCCGTTGGCATTCTATGGACAG
LOC_Os05g09380
Os.6365.1.S1_at--1097--5631Chr05:5248245..5248269 (25 bp)
GACAGCCAAAGTGCTCGACATCTCA
LOC_Os05g09380
Os.6365.1.S1_at--219--3051Chr05:5248277..5248301 (25 bp)
AATCGCAGATGCAAGAAACCTCCAT
LOC_Os05g09380
Os.6365.1.S1_at--445--8651Chr05:5248349..5248373 (25 bp)
TGGGCATAGTTCTCACCTTGGCAAT
LOC_Os05g09380
Os.6365.1.S1_at--404--2651Chr05:5248378..5248402 (25 bp)
AAGCCACGGTTCCTGAAGATGCCAA
LOC_Os05g09380
Os.6365.1.S1_at--253--751Chr05:5248532..5248556 (25 bp)
ATGTATATATTTCTCCAGTTCTTGA
LOC_Os05g09380
Os.6365.1.S1_at--29--10071Chr05:5248643..5248667 (25 bp)
TAGTGTACTAACCTTTAATCCCAGC
LOC_Os05g09380
Os.6365.1.S1_at--827--7671Chr05:5248686..5248710 (25 bp)
GGGTTGGCTTGTACTTATTCAGTGT
LOC_Os05g09380
Os.6365.1.S1_at--729--7431Chr05:5248707..5248731 (25 bp)
GTGTATTGTTCATGTATTGCTCTAT
LOC_Os05g09380
Os.6365.1.S1_at--584--71Chr05:5248722..5248746 (25 bp)
ATTGCTCTATGCATACTTCACTCCA
LOC_Os05g09380
Target Sequence 
GCATGATAATCACGGCTCCCGTTGGCATTCTATGGACAGCCAAAGTGCTCGACATCTCAGCAAGGAAATCGCAGATGCAA
GAAACCTCCATCTTGGGGTCAAGAGTGTGTCTTTTGGGGAGGGGAGAGTGAGTAATTTTGGGCATAGTTCTCACCTTGGC
AATGGTGAAGCCACGGTTCCTGAAGATGCCAAGAAGATTCACAAATTTGCAGAGGCACTGAAGACATCTAGACCAGGTTC
TAGGTCATCAAGGAAGGACCACTGATAAACAAATAGCATAGGAACAATNTGCTGCAGAGTGCAGTAGGCCCATCTTCCTG
GATGTATATATTTCTCCAGTTCTTGATGGGAGATTACTTATAGAAGATGCTACTGGAATAAAGCACACATGCTTTATTCT
GTGTAAAATGTACAATACAGTATATAGTAGTGTAGTGTACTAACCTTTAATCCCAGCCCTCAAACTATTCATTTGGGGTT
GGCTTGTACTTATTCAGTGTATTGTTCATGTATTGCTCTATGCATACTTCACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis