Browse Element(s) Details


Os.6415.1.S1_at

Description gb:AK099454.1
DB_XREF= gi:32984663
TID=Os.6415.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022L10, full insert sequence.
FL= gb:AK099454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3681011/11U6 snRNA-associated Sm-like protein LSm1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36750Os.7537.1.S1_at11/114+21981924..2198286322.0 kDa class IV heat shock protein precursor, putative, expressed
LOC_Os04g36760Os.12611.1.S1_at11/114+21984051..21984890enzyme of the cupin superfamily, putative, expressed
LOC_Os04g36770Os.51562.1.S1_at11/114+21986143..21986834pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g36780Os.47427.1.S1_at11/114+21987709..21990406expressed protein
LOC_Os04g36790OsAffx.26356.1.S1_at11/114+21993735..219950416b-interacting protein 1, putative, expressed
LOC_Os04g36800Os.47381.1.S1_x_at11/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36800Os.47381.2.S1_at10/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36810Os.6415.1.S1_at11/114+22004648..22008142U6 snRNA-associated Sm-like protein LSm1, putative, expressed
LOC_Os04g36820NANA4+22011012..22011497hypothetical protein
LOC_Os04g36830OsAffx.26357.1.S1_at11/114+22017500..22019654expressed protein
LOC_Os04g36840OsAffx.4007.1.S1_at11/114+22020147..22023130pentatricopeptide, putative, expressed
LOC_Os04g36850OsAffx.26358.1.S1_at10/114+22024778..22027275expressed protein
LOC_Os04g36859Os.8619.1.S1_at7/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36859Os.52782.1.S1_at1/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36868NANA4+22030156..22030559expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6415.1.S1_at--754--10191Chr04:22006915..22006939 (25 bp)
TATATTGTGATGTTCCTCTTGGTCT
LOC_Os04g36810
Os.6415.1.S1_at--936--9251Chr04:22006928..22006952 (25 bp)
TCCTCTTGGTCTATATGTGATCCGG
LOC_Os04g36810
Os.6415.1.S1_at--199--5971Chr04:22007077..22007101 (25 bp)
GAGAAGGATGAACTCCCTGCTCACA
LOC_Os04g36810
Os.6415.1.S1_at--84--2111Chr04:22007099..22007123 (25 bp)
ACATGACTTGTGTTTCAGAGGCTGA
LOC_Os04g36810
Os.6415.1.S1_at--948--9271Chr04:22007963..22007987 (25 bp)
TCCTGTCCTCTTGTTGCATGGAATT
LOC_Os04g36810
Os.6415.1.S1_at--1044--10291Chr04:22008020..22008044 (25 bp)
TTTCGCTGTCACATTGTCCGCTAAA
LOC_Os04g36810
Os.6415.1.S1_at--872--7231Chr04:22008035..22008059 (25 bp)
GTCCGCTAAAATCAATCTTCAACTT
LOC_Os04g36810
Os.6415.1.S1_at--394--3191Chr04:22008047..22008071 (25 bp)
CAATCTTCAACTTGCCATCTTTGGA
LOC_Os04g36810
Os.6415.1.S1_at--156--451Chr04:22008063..22008087 (25 bp)
ATCTTTGGATGGAATGACAGTGCTT
LOC_Os04g36810
Os.6415.1.S1_at--880--5651Chr04:22008078..22008102 (25 bp)
GACAGTGCTTGGCATATTGGCATTT
LOC_Os04g36810
Os.6415.1.S1_at--309--3171Chr04:22008116..22008140 (25 bp)
AATTGCTTCACTGTGCTATCTTTTC
LOC_Os04g36810
Target Sequence 
TATATTGTGATGTTCCTCTTGGTCTATATGTGATCCGGGGAGAGAATGTCGTATTAATCGGAGAATTGGATCGTGAGAAG
GATGAACTCCCTGCTCACATGACTTGTGTTTCAGAGGCTGAAATAAGAAAGGCCGAGAAAGCAGAAAGGGAAGCGAGAGA
TCTGAAAGGTTCAATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCT
CCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCAT
GCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCT
TAAAATTTCTTCAGATATCTTCCTGTCCTCTTGTTGCATGGAATTTGTGAAATTTCCTTNGCCACCATACCCTCCGTTTT
CGCTGTCACATTGTCCGCTAAAATCAATCTTCAACTTGCCATCTTTGGATGGAATGACAGTGCTTGGCATATTGGCATTT
GATGTGTAAACTTAATTGCTTCACTGTGCTATCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis