Browse Element(s) Details


Os.6416.1.A1_s_at

Description gb:AU166014
DB_XREF= gi:11610338
DB_XREF=AU166014
CLONE=E30560
TID=Os.6416.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6416 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0694011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06880OsAffx.29070.2.S1_at10/118+3832845..3836002expressed protein
LOC_Os08g06880OsAffx.29070.2.S1_x_at10/118+3832845..3836002expressed protein
LOC_Os08g06890OsAffx.21982.1.S1_x_at11/118+3842143..3843911hypothetical protein
LOC_Os08g06900NANA8+3845652..3847833retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06910NANA8+3849211..3849896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06920OsAffx.15664.2.S1_at11/118+3850119..3851159hypothetical protein
LOC_Os08g06930Os.57048.1.S1_at11/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06930OsAffx.16864.1.S1_at3/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06940Os.6416.1.A1_s_at11/118+3857733..3859597expressed protein
LOC_Os08g06940Os.54399.1.S1_at11/118+3857733..3859597expressed protein
LOC_Os08g06949NANA8+3860300..3860626NA
LOC_Os08g06960OsAffx.32056.1.S1_at11/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06960OsAffx.32056.1.S1_x_at11/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06960OsAffx.30536.1.S1_x_at1/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.3.S1_s_at11/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.1.S1_s_at11/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.4.S1_s_at8/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06980NANA8+3880058..3881154retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6416.1.A1_s_at--1031--8671Chr08:3857942..3857966 (25 bp)
TGTGTTGTGTGTTGTCGCTGGCATG
LOC_Os08g06940
Os.6416.1.A1_s_at--978--7451Chr08:3857948..3857972 (25 bp)
GTGTGTTGTCGCTGGCATGGAGCTT
LOC_Os08g06940
Os.6416.1.A1_s_at--742--3491Chr08:3857963..3857987 (25 bp)
CATGGAGCTTGTGGCCGAACGGATA
LOC_Os08g06940
Os.6416.1.A1_s_at--343--1551Chr08:3857968..3857992 (25 bp)
AGCTTGTGGCCGAACGGATAGACCA
LOC_Os08g06940
Os.6416.1.A1_s_at--240--8451Chr08:3857974..3857998 (25 bp)
TGGCCGAACGGATAGACCACTATGT
LOC_Os08g06940
Os.6416.1.A1_s_at--174--2571Chr08:3857980..3858004 (25 bp)
AACGGATAGACCACTATGTTGGCCT
LOC_Os08g06940
Os.6416.1.A1_s_at--121--6491Chr08:3857984..3858008 (25 bp)
GATAGACCACTATGTTGGCCTGTCA
LOC_Os08g06940
Os.6416.1.A1_s_at--1079--1371Chr08:3857987..3858011 (25 bp)
AGACCACTATGTTGGCCTGTCATTG
LOC_Os08g06940
Os.6416.1.A1_s_at--463--2031Chr08:3857992..3858016 (25 bp)
ACTATGTTGGCCTGTCATTGGTCAC
LOC_Os08g06940
Os.6416.1.A1_s_at--288--731Chr08:3857995..3858019 (25 bp)
ATGTTGGCCTGTCATTGGTCACCCA
LOC_Os08g06940
Os.6416.1.A1_s_at--959--5051Chr08:3858030..3858054 (25 bp)
GCAGCATGCCTTCTGCCTTTACCAA
LOC_Os08g06940
Target Sequence 
TGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAG
GGCAAGGGGCAGCATGCCTTCTGCCTTTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6416.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis