Browse Element(s) Details


OsAffx.16864.1.S1_at

Description tigr:9636.m00629
TID=OsAffx.16864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g069303/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06870OsAffx.5727.1.S1_at7/118+3831667..3832508hypothetical protein
LOC_Os08g06880OsAffx.29070.2.S1_at10/118+3832845..3836002expressed protein
LOC_Os08g06880OsAffx.29070.2.S1_x_at10/118+3832845..3836002expressed protein
LOC_Os08g06890OsAffx.21982.1.S1_x_at11/118+3842143..3843911hypothetical protein
LOC_Os08g06900NANA8+3845652..3847833retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06910NANA8+3849211..3849896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06920OsAffx.15664.2.S1_at11/118+3850119..3851159hypothetical protein
LOC_Os08g06930Os.57048.1.S1_at11/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06930OsAffx.16864.1.S1_at3/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06940Os.6416.1.A1_s_at11/118+3857733..3859597expressed protein
LOC_Os08g06940Os.54399.1.S1_at11/118+3857733..3859597expressed protein
LOC_Os08g06949NANA8+3860300..3860626NA
LOC_Os08g06960OsAffx.32056.1.S1_at11/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06960OsAffx.32056.1.S1_x_at11/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06960OsAffx.30536.1.S1_x_at1/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.3.S1_s_at11/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.1.S1_s_at11/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.4.S1_s_at8/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06980NANA8+3880058..3881154retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16864.1.S1_at--651--6911Chr08:3855279..3855303 (25 bp)
GTATGCACTTGTAGCTTACCTCAGC
LOC_Os08g06930
OsAffx.16864.1.S1_at--1095--2831Chr08:3856743..3856767 (25 bp)
AAGTAGCTTATCTTGCCATGTCAGA
LOC_Os08g06930
OsAffx.16864.1.S1_at--254--6311Chr08:3856766..3856790 (25 bp)
GATGAGCTTATCTTCACATACGGAA
LOC_Os08g06930
OsAffx.16864.1.S1_at--62--7771Chr08:3856796..3856820 (25 bp)
GGTGCAGTGCACATAAAGTCCGTAC
NONE
OsAffx.16864.1.S1_at--897--2851Chr08:3856811..3856835 (25 bp)
AAGTCCGTACTGCTGAAGGCTGGAA
NONE
OsAffx.16864.1.S1_at--879--8051Chr08:3857060..3857084 (25 bp)
GGAGACAACCTTTGGATACAGCTAT
NONE
OsAffx.16864.1.S1_at--1042--5291Chr08:3857217..3857241 (25 bp)
GAAGGGAAGCTCTGTTTTCCCCATT
NONE
OsAffx.16864.1.S1_at--1101--10371Chr08:3857231..3857255 (25 bp)
TTTTCCCCATTACGGAGGCAAGCGT
NONE
OsAffx.16864.1.S1_at--75--171Chr08:3857346..3857370 (25 bp)
ATTTTACTCGAACAGCATGCCGCGT
NONE
OsAffx.16864.1.S1_at--129--9811Chr08:3857376..3857396 (21 bp)
TAACGCCACAACCATGTGCAGTTTG
NONE
OsAffx.16864.1.S1_at--1127--7831Chr08:3857718..3857742 (25 bp)
GGTACTTGTGAGGTTGCAGCTGTCA
NONE
Target Sequence 
GTATGCACTTGTAGCTTACCTCAGCAGCATGAACATGGAGTGTGCTACAGATGAATGCGCTGGGCAGTGGGAACTGAATC
AAGTAGCTTATCTTGCCATGTCAGATGAGCTTATCTTCACATACGGAATGTCTGGTGCAGTGCACATAAAGTCCGTACTG
CTGAAGGCTGGAAAGGAGCATGGAGACAACCTTTGGATACAGCTATTCAGCAAGCTGATAGAACATACCTGGCAGAATGA
ATCAAGGTGGGGAGTTGAAGGGAAGCTCTGTTTTCCCCATTACGGAGGCAAGCGTGAAGAAAAAGTTGAATTTTACTCGA
ACAGCATGCCGCGTGCACATAACGCCACAACCATGTGCAGTTTGGTGGTACTTGTGAGGTTGCAGCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis