Browse Element(s) Details


Os.57048.1.S1_at

Description gb:AK110809.1
DB_XREF= gi:32996018
TID=Os.57048.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F03, full insert sequence.
FL= gb:AK110809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0693011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06870OsAffx.5727.1.S1_at7/118+3831667..3832508hypothetical protein
LOC_Os08g06880OsAffx.29070.2.S1_at10/118+3832845..3836002expressed protein
LOC_Os08g06880OsAffx.29070.2.S1_x_at10/118+3832845..3836002expressed protein
LOC_Os08g06890OsAffx.21982.1.S1_x_at11/118+3842143..3843911hypothetical protein
LOC_Os08g06900NANA8+3845652..3847833retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06910NANA8+3849211..3849896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06920OsAffx.15664.2.S1_at11/118+3850119..3851159hypothetical protein
LOC_Os08g06930Os.57048.1.S1_at11/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06930OsAffx.16864.1.S1_at3/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06940Os.6416.1.A1_s_at11/118+3857733..3859597expressed protein
LOC_Os08g06940Os.54399.1.S1_at11/118+3857733..3859597expressed protein
LOC_Os08g06949NANA8+3860300..3860626NA
LOC_Os08g06960OsAffx.32056.1.S1_at11/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06960OsAffx.32056.1.S1_x_at11/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06960OsAffx.30536.1.S1_x_at1/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.3.S1_s_at11/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.1.S1_s_at11/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.4.S1_s_at8/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06980NANA8+3880058..3881154retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57048.1.S1_at--120--7831Chr08:3854757..3854781 (25 bp)
GGTCAGCATCCAAAAATTCTCTCTT
LOC_Os08g06930
Os.57048.1.S1_at--332--351Chr08:3854828..3854852 (25 bp)
ATAATGCAATTTTACCTGTTCTGAC
LOC_Os08g06930
Os.57048.1.S1_at--437--10471Chr08:3854839..3854863 (25 bp)
TTACCTGTTCTGACTTGTACAATAG
LOC_Os08g06930
Os.57048.1.S1_at--831--7031Chr08:3854855..3854879 (25 bp)
GTACAATAGTAGCTCATTCGATCTC
LOC_Os08g06930
Os.57048.1.S1_at--731--91Chr08:3854870..3854894 (25 bp)
ATTCGATCTCATAAGTACCACTTAA
LOC_Os08g06930
Os.57048.1.S1_at--842--3651Chr08:3854890..3854914 (25 bp)
CTTAAATTGTAGCTCATTCGATCTG
LOC_Os08g06930
Os.57048.1.S1_at--732--91Chr08:3854905..3854929 (25 bp)
ATTCGATCTGATAACTACCACTTAG
LOC_Os08g06930
Os.57048.1.S1_at--648--1711Chr08:3854921..3854945 (25 bp)
ACCACTTAGATTGTAGCTGATTTTA
LOC_Os08g06930
Os.57048.1.S1_at--349--10571Chr08:3854951..3854975 (25 bp)
TTCTTTTTTCTGCTTGTAGTGCATA
LOC_Os08g06930
Os.57048.1.S1_at--517--7151Chr08:3854990..3855014 (25 bp)
GTCTAGTGAACCCTTGAGGCACCAA
LOC_Os08g06930
Os.57048.1.S1_at--345--1971Chr08:3855047..3855071 (25 bp)
ACTGTACTGTAAAATGGAGCTCTTT
LOC_Os08g06930
Target Sequence 
GGTCAGCATCCAAAAATTCTCTCTTGGAGATTGATGATATTACATGACCATATATCATGAGTAATAAGGAAATAATGCAA
TTTTACCTGTTCTGACTTGTACAATAGTAGCTCATTCGATCTCATAAGTACCACTTAAATTGTAGCTCATTCGATCTGAT
AACTACCACTTAGATTGTAGCTGATTTTAGTTGTTTCTTTTTTCTGCTTGTAGTGCATATATGACTGTAAGGGGTCTAGT
GAACCCTTGAGGCACCAATATTAGAAAAAGGTTGTGGATTTTTTTTTATAACTGTACTGTAAAATGGAGCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis