Browse Element(s) Details


OsAffx.15664.2.S1_at

Description tigr:9636.m00628
TID=OsAffx.15664.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0692011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06870OsAffx.5727.1.S1_at7/118+3831667..3832508hypothetical protein
LOC_Os08g06880OsAffx.29070.2.S1_at10/118+3832845..3836002expressed protein
LOC_Os08g06880OsAffx.29070.2.S1_x_at10/118+3832845..3836002expressed protein
LOC_Os08g06890OsAffx.21982.1.S1_x_at11/118+3842143..3843911hypothetical protein
LOC_Os08g06900NANA8+3845652..3847833retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06910NANA8+3849211..3849896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06920OsAffx.15664.2.S1_at11/118+3850119..3851159hypothetical protein
LOC_Os08g06930Os.57048.1.S1_at11/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06930OsAffx.16864.1.S1_at3/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06940Os.6416.1.A1_s_at11/118+3857733..3859597expressed protein
LOC_Os08g06940Os.54399.1.S1_at11/118+3857733..3859597expressed protein
LOC_Os08g06949NANA8+3860300..3860626NA
LOC_Os08g06960OsAffx.32056.1.S1_at11/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06960OsAffx.32056.1.S1_x_at11/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06960OsAffx.30536.1.S1_x_at1/118+3869410..3873889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.3.S1_s_at11/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.1.S1_s_at11/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g06970OsAffx.10637.4.S1_s_at8/118+3875422..3879108transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15664.2.S1_at--668--5791Chr08:3850207..3850231 (25 bp)
GACGCACAATGGTGTGGTGCCTCCA
LOC_Os08g06920
OsAffx.15664.2.S1_at--1155--8651Chr08:3850219..3850243 (25 bp)
TGTGGTGCCTCCACCAGGATTCTGT
LOC_Os08g06920
OsAffx.15664.2.S1_at--113--1011Chr08:3850234..3850258 (25 bp)
AGGATTCTGTCCAGCGTTGTGCACA
LOC_Os08g06920
OsAffx.15664.2.S1_at--1132--1631Chr08:3850246..3850270 (25 bp)
AGCGTTGTGCACATGCCCGGCGTCG
LOC_Os08g06920
OsAffx.15664.2.S1_at--411--1811Chr08:3850277..3850301 (25 bp)
ACCCTCGGCGAGTGGCGATGGTATT
LOC_Os08g06920
OsAffx.15664.2.S1_at--473--4051Chr08:3850292..3850316 (25 bp)
CGATGGTATTGGAGTCGGTGCTACC
LOC_Os08g06920
OsAffx.15664.2.S1_at--652--4071Chr08:3850441..3850465 (25 bp)
CGAGTATGACGCACGGGAGCCCGAA
LOC_Os08g06920
OsAffx.15664.2.S1_at--838--1912Chr08:3850453..3850477 (25 bp)
ACGGGAGCCCGAAGGATCGTCTCGA
LOC_Os08g06920
OsAffx.15664.2.S1_at--607--5311Chr08:3850463..3850487 (25 bp)
GAAGGATCGTCTCGAGCTGCTGCAA
LOC_Os08g06920
OsAffx.15664.2.S1_at--562--9371Chr08:3850474..3850498 (25 bp)
TCGAGCTGCTGCAAGAGACGACGAA
LOC_Os08g06920
OsAffx.15664.2.S1_at--570--8171Chr08:3850546..3850570 (25 bp)
GGAACATGACGAGCCATTCTTACCA
LOC_Os08g06920
Target Sequence 
GACGCACAATGGTGTGGTGCCTCCACCAGGATTCTGTCCAGCGTTGTGCACATGCCCGGCGTCGCCGGAGACCCTCGGCG
AGTGGCGATGGTATTGGAGTCGGTGCTACCGGCTCCGGCGTTCCTTTGGGCAGCCGCGCCGTTGCCGCGGCGTCTTCCTC
CACGTCCGGCGAAGCCAGGAGGAGGAGATGGGGGGCCACGGCCGGCATTGCCAGCACGACGGCCCCTGCCACGTCGAGTA
TGACGCACGGGAGCCCGAAGGATCGTCTCGAGCTGCTGCAAGAGACGACGAAGGTGGCATGCACGGAGATTGCGGGGAAG
GGAGGAGTCGGCAGTGAGGGGAACATGACGAGCCATTCTTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15664.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis