Browse Element(s) Details


Os.6417.1.S1_at

Description gb:AK062834.1
DB_XREF= gi:32972852
TID=Os.6417.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1773_H01.12 (OJ1773_H01.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-G10, full insert sequence.
FL= gb:AK062834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3785011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37810Os.44473.1.S1_at8/117+22670152..22675055Leucine Rich Repeat family protein, expressed
LOC_Os07g37820OsAffx.16601.1.S1_at11/117+22683081..22684020hypothetical protein
LOC_Os07g37830Os.44471.1.S1_a_at11/117+22687206..22691594Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor, putative, expressed
LOC_Os07g37840Os.44471.2.S1_at11/117+22691463..22692770hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g37850Os.6417.1.S1_at11/117+22694263..22695016expressed protein
LOC_Os07g37860OsAffx.20387.1.S1_x_at1/117+22702460..22708298retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g37870Os.53479.1.S1_x_at2/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.31069.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870Os.25754.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.17106.1.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37880NANA7+22716434..22716655hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6417.1.S1_at--389--5371Chr07:22694747..22694771 (25 bp)
GAAGCAGCCGGAGACGTTCCACGAG
LOC_Os07g37850
Os.6417.1.S1_at--260--2091Chr07:22694664..22694688 (25 bp)
ACATCACCGGAGTCGACCACAGCGT
LOC_Os07g37850
Os.6417.1.S1_at--385--4671Chr07:22694485..22694509 (25 bp)
GCGGTTTGCCGGAGTAATAATGTGT
LOC_Os07g37850
Os.6417.1.S1_at--958--351Chr07:22694469..22694493 (25 bp)
ATAATGTGTGTGATCCCACGTGTCC
LOC_Os07g37850
Os.6417.1.S1_at--430--1931Chr07:22694434..22694458 (25 bp)
ACGGCTGCCGTAGTGGAGTCGTTTA
LOC_Os07g37850
Os.6417.1.S1_at--166--5911Chr07:22694419..22694443 (25 bp)
GAGTCGTTTAGTTTTTCAATTGTGT
LOC_Os07g37850
Os.6417.1.S1_at--78--9751Chr07:22694404..22694428 (25 bp)
TCAATTGTGTGTGGATGCGTAGGAT
LOC_Os07g37850
Os.6417.1.S1_at--369--4031Chr07:22694387..22694411 (25 bp)
CGTAGGATGCATTCAGATGTTTGGC
LOC_Os07g37850
Os.6417.1.S1_at--851--731Chr07:22694371..22694395 (25 bp)
ATGTTTGGCTTGATCGATCGCGTGC
LOC_Os07g37850
Os.6417.1.S1_at--869--6371Chr07:22694356..22694380 (25 bp)
GATCGCGTGCTTTTGTTAGCTTTGA
LOC_Os07g37850
Os.6417.1.S1_at--460--6551Chr07:22694303..22694327 (25 bp)
GATTATGCAAGAGCTCGGTAAAGTA
LOC_Os07g37850
Target Sequence 
GAAGCAGCCGGAGACGTTCCACGAGGGGACGGTGTTGATCCCTGGGCTCGGGCGGTTCGAGCTCGGCAGCACCTACGTGC
CGGACATCACCGGAGTCGACCACAGCGTCCCGGCAGCCGAGCACGGGCAGTTCCTNCCCCGGCGCCGACGACACATGGGT
CCCCAACCCCGGCTTCGAGGTGCCCAACCCCTTCCAGCCCGGCTCGTCTTCTCCCTGAATCACCCGCCGGCTCGCCGTCG
TCGCCGAGCTAGCTAGCTAGGCGGCGGTTTGCCGGAGTAATAATGTGTGTGATCCCACGTGTCCCCGTCGGTGCACGGCT
GCCGTAGTGGAGTCGTTTAGTTTTTCAATTGTGTGTGGATGCGTAGGATGCATTCAGATGTTTGGCTTGATCGATCGCGT
GCTTTTGTTAGCTTTGAACTCGTAATAATGTATTAATTGGTGAGTGATTATGCAAGAGCTCGGTAAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis