Browse Element(s) Details


Os.6418.1.S1_at

Description gb:AK061224.1
DB_XREF= gi:32971242
TID=Os.6418.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative raffinose synthase (OJ1276_B06.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H01, full insert sequence.
FL= gb:AK061224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0753011/11Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07490Os.18584.1.S1_at11/111+3556534..3571082RST1, putative, expressed
LOC_Os01g07500Os.37066.1.S1_at11/111+3574275..3578661Allinase, C-terminal domain containing protein, expressed
LOC_Os01g07510OsAffx.1955.1.S1_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07510OsAffx.1955.1.S1_x_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07520Os.9383.1.S1_a_at11/111+3588629..3592954expressed protein
LOC_Os01g07520Os.9383.2.S1_x_at11/111+3588629..3592954expressed protein
LOC_Os01g07530Os.6418.1.S1_at11/111+3595253..3598662Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os01g07540OsAffx.1956.1.S1_at11/111+3606522..3610484D111/G-patch domain-containing protein, putative
LOC_Os01g07550NANA1+3613300..3616018hypothetical protein
LOC_Os01g07560OsAffx.23150.1.S1_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed
LOC_Os01g07560Os.16980.1.S1_s_at11/111+3618325..3622155Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6418.1.S1_at--217--3711Chr01:3595551..3595575 (25 bp)
CTAGGCTGTGCAAGGTGAACGGCCA
LOC_Os01g07530
Os.6418.1.S1_at--617--2571Chr01:3595534..3595558 (25 bp)
AACGGCCAGGATGCGGAGTTCAAGT
LOC_Os01g07530
Os.6418.1.S1_at--997--6751Chr01:3595517..3595541 (25 bp)
GTTCAAGTACGAGGACGGCATCGTC
LOC_Os01g07530
Os.6418.1.S1_at--1005--4971Chr01:3595500..3595524 (25 bp)
GCATCGTCACCGTCGATGTGCCGTG
LOC_Os01g07530
Os.6418.1.S1_at--1077--1751Chr01:3595474..3595498 (25 bp)
ACCGGGTCGTCGAAGAAGCTGTCGC
LOC_Os01g07530
Os.6418.1.S1_at--155--1451Chr01:3595461..3595485 (25 bp)
AGAAGCTGTCGCGTGTCGAGTACTT
LOC_Os01g07530
Os.6418.1.S1_at--47--9311Chr01:3595453..3595477 (25 bp)
TCGCGTGTCGAGTACTTTTACTAGT
LOC_Os01g07530
Os.6418.1.S1_at--907--10331Chr01:3595437..3595461 (25 bp)
TTTACTAGTGTGGTTCAATGCTGGA
LOC_Os01g07530
Os.6418.1.S1_at--788--2811Chr01:3595329..3595353 (25 bp)
AAGTTGCTTAGCTCTGGTTGGTTTC
LOC_Os01g07530
Os.6418.1.S1_at--978--7911Chr01:3595314..3595338 (25 bp)
GGTTGGTTTCGGTTGGATTATCATT
LOC_Os01g07530
Os.6418.1.S1_at--736--9311Chr01:3595294..3595318 (25 bp)
TCATTGTTACGGGTTTTAAACGCTG
LOC_Os01g07530
Target Sequence 
CTAGGCTGTGCAAGGTGAACGGCCAGGATGCGGAGTTCAAGTACGAGGACGGCATCGTCACCGTCGATGTGCCGTGGACC
GGGTCGTCGAAGAAGCTGTCGCGTGTCGAGTACTTTTACTAGTGTGGTTCAATGCTGGAAAGAGACTAAGACAAAATTTT
CGGTCTTTTTATTTTTTATTTTACTTAGGTCGGAAAATAATTTNAGTGTGTGAGAGCTTTGTAAGTTGCTTAGCTCTGGT
TGGTTTCGGTTGGATTATCATTGTTACGGGTTTTAAACGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis