Browse Element(s) Details


Os.6428.1.S1_at

Description gb:AK070272.1
DB_XREF= gi:32980296
TID=Os.6428.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1015E06.5 (B1015E06.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043M23, full insert sequence.
FL= gb:AK070272.1 gb:AK104558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1034010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10290Os.27665.1.S1_at11/111+5410397..5413668Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein
LOC_Os01g10310OsAffx.1977.1.S1_x_at10/111+5420861..5421373hypothetical protein
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed
LOC_Os01g10340Os.6428.1.S1_at10/111+5432245..5439448expressed protein
LOC_Os01g10340OsAffx.12165.1.S1_at1/111+5432245..5439448expressed protein
LOC_Os01g10350Os.35261.1.S1_at11/111+5439668..5443048MPPN domain containing protein, expressed
LOC_Os01g10370Os.50646.1.S1_s_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_x_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10380NANA1+5460912..5464244transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6428.1.S1_at--90--6731Chr01:5434447..5434469 (23 bp)
GTTCTGCCTGAACTCTCTAACATAT
LOC_Os01g10340
Os.6428.1.S1_at--846--3551Chr01:5433774..5433798 (25 bp)
CATCTTCCCACTTATATACTCTTTG
LOC_Os01g10340
Os.6428.1.S1_at--825--871Chr01:5433746..5433770 (25 bp)
AGGCCACTGAAGTTGCACGATTCCC
LOC_Os01g10340
Os.6428.1.S1_at--566--3291Chr01:5432699..5432720 (22 bp)
CAAAGAAACTTCTCTGCCAGCACTT
LOC_Os01g10340
Os.6428.1.S1_at--588--2051Chr01:5432678..5432702 (25 bp)
ACTTCGACCTTGACAGGCGACTGAT
LOC_Os01g10340
Os.6428.1.S1_at--330--3531Chr01:5432545..5432569 (25 bp)
CATCTATCCCAGCTGTCTCAAAAAG
LOC_Os01g10340
Os.6428.1.S1_at--757--71Chr01:5432511..5432535 (25 bp)
ATTCCCTTTTGTCGACGAACCAGAT
LOC_Os01g10340
Os.6428.1.S1_at--1060--8891Chr01:5432420..5432444 (25 bp)
TGAGTTTACTTGTACCCATCCAATC
LOC_Os01g10340
Os.6428.1.S1_at--668--431Chr01:5432344..5432368 (25 bp)
ATCTTACTACCATATGTCACCTCTT
LOC_Os01g10340
Os.6428.1.S1_at--1034--10451Chr01:5432316..5432340 (25 bp)
TTACGGAATGTTACCACACCTGTGG
LOC_Os01g10340
Os.6428.1.S1_at--92--371Chr01:5432245..5432269 (25 bp)
ATCAATTCAGACACCATTCGTTTCC
NONE
Target Sequence 
GTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGNCATTTTCCAAATGC
TGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGAT
TCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTCGACCTTGAC
AGGCGACTGATTGAATACCTATCTAGATGACCCATCATCTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTG
TCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTA
TGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCT
TACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGNTTT
CCACTGCAGTTAGTGATCAATTCAGACACCATTCGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis