Browse Element(s) Details


Os.6548.1.S1_at

Description gb:AK067293.1
DB_XREF= gi:32977311
TID=Os.6548.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105C11, full insert sequence.
FL= gb:AK067711.1 gb:AK067293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4260011/11C-terminal domain phosphatase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42590Os.20037.2.A1_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42590Os.20037.1.S1_x_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42600Os.6548.1.S1_at11/112+25620879..25630184C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os02g42610OsAffx.12458.1.S1_at11/112+25632333..25632759hypothetical protein
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009628biological_processresponse to abiotic stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0019204molecular_functionnucleotide phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6548.1.S1_at--1030--4871Chr02:25629696..25629720 (25 bp)
GCTTTGGGTCTGATCTCACGTTAAT
LOC_Os02g42600
Os.6548.1.S1_at--712--8771Chr02:25629726..25629750 (25 bp)
TGTTTGACTTGAAGTGTGCCCATCC
LOC_Os02g42600
Os.6548.1.S1_at--765--8651Chr02:25629752..25629776 (25 bp)
TGTGGATACCCAGACGTACCGCTTC
LOC_Os02g42600
Os.6548.1.S1_at--137--10831Chr02:25629786..25629810 (25 bp)
TTGTGCAGCTTCTGTCCTGCTTGGG
LOC_Os02g42600
Os.6548.1.S1_at--745--5471Chr02:25629812..25629836 (25 bp)
GAACTTCAATCCGTGGCTGCAGAGG
LOC_Os02g42600
Os.6548.1.S1_at--254--3851Chr02:25629828..25629852 (25 bp)
CTGCAGAGGCGCTGCGACCGTTTTA
LOC_Os02g42600
Os.6548.1.S1_at--442--7851Chr02:25629896..25629920 (25 bp)
GGTAGCTAATTTTGTTGCGGTGGAA
LOC_Os02g42600
Os.6548.1.S1_at--191--9751Chr02:25629929..25629953 (25 bp)
TAATCCTACATTAAATCCCGTGTTT
LOC_Os02g42600
Os.6548.1.S1_at--562--5251Chr02:25630113..25630137 (25 bp)
GAATCTCTCGTATGTTGTCTCCTGC
LOC_Os02g42600
Os.6548.1.S1_at--959--4751Chr02:25630136..25630160 (25 bp)
GCTGAAAAACTGTACACGTCTGCTG
LOC_Os02g42600
Os.6548.1.S1_at--875--1891Chr02:25630151..25630175 (25 bp)
ACGTCTGCTGTGGTCGTGACTACGA
LOC_Os02g42600
Target Sequence 
GCTTTGGGTCTGATCTCACGTTAATTGACATGTTTGACTTGAAGTGTGCCCATCCNNTTGTGGATACCCAGACGTACCGC
TTCCGTGGGGGCTTGTGCAGCTTCTGTCCTGCTTGGGGGAACTTCAATCCGTGGCTGCAGAGGCGCTGCGACCGTTTTAA
CATTTTGTTTGTAGGATAAGTTTGTAGCTTAGGTTTGGAGTAGGTAGCTAATTTTGTTGCGGTGGAAGTAGGTATTAATC
CTACATTAAATCCCGTGTTTATTTTTTTAGGTCAATACTGACAAAAGTTCAGTAGCTAGATGTTTATTATTTGTTTCTTT
ATGTAGTCATTCTTTATTATGTTCTTGTCATTATTTGTAAAGATCTACGGTTTGTTGATTGTGTTGCCGGTGTAACCTCG
CATCGCGGGGTGGCCTCTCGAATCTCTCGTATGTTGTCTCCTGCTGAAAAACTGTACACGTCTGCTGTGGTCGTGACTAC
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis