Browse Element(s) Details


Os.6575.1.S1_s_at

Description gb:AK066521.1
DB_XREF= gi:32976539
TID=Os.6575.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071I10, full insert sequence.
FL= gb:AK066521.1 gb:AK062142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4147011/11Lysyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41460NANA2+24824827..24826182expressed protein
LOC_Os02g41470Os.6575.1.S1_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.6575.1.S1_s_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.22603.1.A1_a_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470OsAffx.25238.1.S1_at1/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41480Os.49789.1.S1_at11/112+24856334..24858930Protein kinase domain containing protein, expressed
LOC_Os02g41490OsAffx.24668.1.S1_at11/112+24860902..24861906hypothetical protein
LOC_Os02g41500OsAffx.12439.1.S1_at11/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41500OsAffx.21755.1.S1_x_at1/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41510Os.10172.1.S1_at11/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41510OsAffx.7575.1.S1_x_at1/112+24872907..24874063Myb-related protein Myb4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006430biological_processlysyl-tRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004824molecular_functionlysine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6575.1.S1_s_at--375--5471Chr02:24843787..24843811 (25 bp)
GAACTTTTCATATGTGGTCGTGAGA
LOC_Os02g41470
Os.6575.1.S1_s_at--737--7831Chr02:24843760..24843784 (25 bp)
GGTAATGCATTTTCTGAGCTCACAG
LOC_Os02g41470
Os.6575.1.S1_s_at--974--8911Chr02:24843746..24843770 (25 bp)
TGAGCTCACAGACCCAATTGATCAG
LOC_Os02g41470
Os.6575.1.S1_s_at--733--631Chr02:24843017..24843041 (25 bp)
ATGCTAAGCGTGCTGCAATGACCAA
LOC_Os02g41470
Os.6575.1.S1_s_at--1158--1291Chr02:24842932..24842956 (25 bp)
AGATGAAGACTTCCTGACTTCCCTA
LOC_Os02g41470
Os.6575.1.S1_s_at--365--5291Chr02:24842764..24842784 (21 bp)
GAATGGGCCTTGGAATCGACCGACT
LOC_Os02g41470
Os.6575.1.S1_s_at--946--5251Chr02:24842752..24842776 (25 bp)
GAATCGACCGACTAGTAATGCTTTT
LOC_Os02g41470
Os.6575.1.S1_s_at--908--9731Chr02:24842737..24842761 (25 bp)
TAATGCTTTTGACCAACTCGGCGAG
LOC_Os02g41470
Os.6575.1.S1_s_at--1002--731Chr02:24842704..24842728 (25 bp)
ATGTTATTGCCTTTCCAGTCCTAAA
LOC_Os02g41470
Os.6575.1.S1_s_at--850--4611Chr02:24842491..24842515 (25 bp)
GCGAGGGTCAATAGTCCAGCCAGAT
LOC_Os02g41470
Os.6575.1.S1_s_at--480--10291Chr02:24842429..24842453 (25 bp)
TTTCCATTTTCCAACAGCCATTTTT
LOC_Os02g41470
Target Sequence 
GAACTTTTCATATGTGGTCGTGAGATTGGTAATGCATTTTCTGAGCTCACAGACCCAATTGATCAGAGGGGTCGTTTTGA
AAATCAAATTAAGCAGCACAATGCTAAGCGTGCTGCAATGACCAAGGAGGTCAAATCTACTGAGGGTAAACACGAGGAAG
ATGATTTTTCGTATGAAGTTACCTTAGATGAAGACTTCCTGACTTCCCTAGAGTACGGAATGCCACCTGCTTCCGGAATG
GGCCTTGGAATCGACCGACTAGTAATGCTTTTGACCAACTCGGCGAGTATAAGGGATGTTATTGCCTTTCCAGTCCTAAA
GATTCAACAATAGCACTTCTGCTCGGATAGCTCTACCATTACTCTCTTTCTAAAATTTGAGTGGATACAGGCGAGGGTCA
ATAGTCCAGCCAGATAGTCAAAATAGGTATCAATTATGAATTTCATTTTGGGTTTCCATTTTCCAACAGCCATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6575.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis