Browse Element(s) Details


Os.6636.1.S1_at

Description gb:AK107191.1
DB_XREF= gi:32992400
TID=Os.6636.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A04, full insert sequence.
FL= gb:AK107191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3989010/11SBP-domain protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39850Os.13008.2.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.2.S1_x_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.1.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.6901.1.S1_at1/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39860Os.17880.1.S1_a_at11/118+25117486..25121813Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os08g39870Os.7762.1.S1_at10/118+25127286..25134092Glycosyl hydrolase family 1 protein, expressed
LOC_Os08g39880Os.5805.1.S1_at11/118+25137215..25140785G-patch domain containing protein, expressed
LOC_Os08g39890Os.6636.1.S1_at10/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39890OsAffx.2442.1.S1_x_at1/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39900OsAffx.6089.1.S1_at11/118+25148126..25148752hypothetical protein
LOC_Os08g39910Os.27691.1.S1_x_at3/118+25157104..25160098retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.2.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.1.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39930OsAffx.17425.1.S1_at11/118+25169117..25169446expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6636.1.S1_at--333--10271Chr08:25142208..25142232 (25 bp)
TTTGATGGCAATCCTGTGGCACCCT
LOC_Os08g39890
Os.6636.1.S1_at--478--871Chr08:25142178..25142202 (25 bp)
ATGGCGGGTAGCTACATGGCACCAA
LOC_Os08g39890
Os.6636.1.S1_at--796--3391Chr08:25142100..25142124 (25 bp)
CAGCTACCACATGAAGTCTCACTTG
LOC_Os08g39890
Os.6636.1.S1_at--482--5471Chr08:25141872..25141896 (25 bp)
GAACTGAAGAACCTCATGCTGCCTG
LOC_Os08g39890
Os.6636.1.S1_at--344--9191Chr08:25141853..25141877 (25 bp)
TGCCTGCCCTTATTTTGTGTTCAAA
LOC_Os08g39890
Os.6636.1.S1_at--463--7411Chr08:25141837..25141861 (25 bp)
GTGTTCAAATTTTCCTTTCCAGTAT
LOC_Os08g39890
Os.6636.1.S1_at--274--8951Chr08:25141794..25141818 (25 bp)
TGACTGGCGATTAATCTCCCTGTGA
LOC_Os08g39890
Os.6636.1.S1_at--944--7391Chr08:25141773..25141797 (25 bp)
GTGATGAATAATAATGCGCGCCCTT
LOC_Os08g39890
Os.6636.1.S1_at--841--4551Chr08:25141758..25141782 (25 bp)
GCGCGCCCTTGAACTCAATTAATTG
LOC_Os08g39890
Os.6636.1.S1_at--823--3531Chr08:25141725..25141749 (25 bp)
CATCCATCTATGTAACTCTCCATGA
LOC_Os08g39890
Os.6636.1.S1_at--1104--7811NONE
GGTCACCATGAATCTTTTTCTGCTT
NONE
Target Sequence 
TTTGATGGCAATCCTGTGGCACCCTCCGCCATGGCGGGTAGCTACATGGCACCAAGCCCCTGGACAGGTTCTCGGGGCCA
TGAGGGTGGTGGTCGGAGCGTGGCGCACCAGCTACCACATGAAGTCTCACTTGATGAGGTGCACCCTGGTCCTAGCCATC
ATGCCCACTTCTCCGGTGAGCTTGAGCTTGCTCTGCAGGGGNACGGTCCAGCCCCNNCACCACGCATCGATNCTGGGTCC
GGCAGCACCTTCGACCAAACCAGCAACACGATGGATTGGTCTCTGTAGAGGCTGTTCCAGCTGCCATCGATCTGTCGTCC
CGCAAGGCGAGTCATGGAACTGAAGAACCTCATGCTGCCTGCCCTTATTTTGTGTTCAAATTTTCCTTTCCAGTATGGAA
AGGAAATTCTAAGGTGACTGGCGATTAATCTCCCTGTGATGAATAATAATGCGCGCCCTTGAACTCAATTAATTGCTGTG
CCGCATCCATCTATGTAACTCTCCATGAATTTTTAAGTATCAGTGTTAATGCTGTATTGTCGAGGACTTCTGCNCGATAT
GTAATTCNCTAATGTGGTCACCATGAATCTTTTTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis