Browse Element(s) Details


Os.6671.1.S1_a_at

Description gb:AY224537.1
DB_XREF= gi:29367590
TID=Os.6671.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6671 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 23275 arm repeat protein mRNA, complete cds.
PROD=arm repeat protein
FL= gb:AY224537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3993011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein
LOC_Os05g39910OsAffx.27245.1.S1_at7/115+23367994..23369401hypothetical protein
LOC_Os05g39920NANA5+23371317..23375666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g39930Os.6671.1.S1_a_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39930Os.6671.2.S1_x_at11/115+23380031..23382327U-box domain containing protein, expressed
LOC_Os05g39940OsAffx.4565.1.S1_at11/115+23390051..23390494Zinc finger, C3HC4 type family protein
LOC_Os05g39950NANA5+23394147..23395498uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g39960Os.12561.1.S1_at11/115+23399874..2340257140S ribosomal protein S26, putative, expressed
LOC_Os05g39970OsAffx.27246.1.S1_at11/115+23403212..23404002hypothetical protein
LOC_Os05g39970OsAffx.7080.1.S1_x_at1/115+23403212..23404002hypothetical protein
LOC_Os05g39980Os.57119.1.S1_at10/115+23404651..23408387expressed protein
LOC_Os05g39980Os.32889.2.S1_at1/115+23404651..23408387expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6671.1.S1_a_at--581--1511Chr05:23381649..23381673 (25 bp)
AGCACCAAGAAGGACGCGATCGCCG
LOC_Os05g39930
Os.6671.1.S1_a_at--792--4131Chr05:23381674..23381698 (25 bp)
CGCTCCTGTGCCTGTCCGGCGAGAG
LOC_Os05g39930
Os.6671.1.S1_a_at--49--5451Chr05:23381702..23381726 (25 bp)
GAACGTCGGGAAGCTCGTGGAAGCC
LOC_Os05g39930
Os.6671.1.S1_a_at--463--7551Chr05:23381943..23381967 (25 bp)
GTGGCGCAGGTGATGTCGGTCTCCG
LOC_Os05g39930
Os.6671.1.S1_a_at--595--7171Chr05:23381961..23381985 (25 bp)
GTCTCCGGCGTGGAGTGGGCGATAT
LOC_Os05g39930
Os.6671.1.S1_a_at--161--1951Chr05:23382111..23382135 (25 bp)
ACGGCCATTACAGCGTCGTGAAATT
LOC_Os05g39930
Os.6671.1.S1_a_at--539--10471Chr05:23382118..23382142 (25 bp)
TTACAGCGTCGTGAAATTCCACCAC
LOC_Os05g39930
Os.6671.1.S1_a_at--438--8951Chr05:23382129..23382153 (25 bp)
TGAAATTCCACCACGGCCACATTGA
LOC_Os05g39930
Os.6671.1.S1_a_at--538--1691Chr05:23382138..23382162 (25 bp)
ACCACGGCCACATTGATTAATTCAT
LOC_Os05g39930
Os.6671.1.S1_a_at--649--10351Chr05:23382185..23382209 (25 bp)
TTTTTTCCCACGCACAACGAATGCT
LOC_Os05g39930
Os.6671.1.S1_a_at--1162--3331Chr05:23382193..23382217 (25 bp)
CACGCACAACGAATGCTTGTACAAA
LOC_Os05g39930
Target Sequence 
AGCACCAAGAAGGACGCGATCGCCGCGCTCCTGTGCCTGTCCGGCGAGAGGGAGAACGTCGGGAAGCTCGTGGAAGCCGG
CGCCGCGGAGGCGGCGCTGTCGGCGATCAGCGAGGAGGAGACCGCCGTGGCGGTGCTGGCGTCGCTGGCCAAGCGCGGCG
GCGCGGAGGCGATCGTGAACATCGACGGCGCGGTGGTGCGCCTCGTGGCCGAGCTGCGGCGCGGCACGGAGTGGTCAAGG
GAGTGCGCNNNNNCCGCGCTGGTGCTGCTCTGCCGCCGCGTGGGCGCCGCCGTGGTGGCGCAGGTGATGTCGGTCTCCGG
CGTGGAGTGGGCGATATGGGAGCTGATGGCCACCGGCACGNNGCGCGCGCGGCGCAAGGCCGCGTCGCTCGGCAGGGCAT
GCCGGCGTTGGGCCGCGGCGGACAAACCGCGGNAGTACCCCGCCACCTCCGACGTCACGACGACGGCCATTACAGCGTCG
TGAAATTCCACCACGGCCACATTGATTAATTCATAGGAGCAGATAAAATTTCGATTTTTTTTCCCACGCACAACGAATGC
TTGTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6671.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis