Browse Element(s) Details


Os.6745.1.S1_at

Description gb:AK101828.1
DB_XREF= gi:32987037
TID=Os.6745.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068F13, full insert sequence.
FL= gb:AK101828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3418011/11FH protein NFH2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34140Os.8469.1.S1_at11/119+20155974..20157770expressed protein
LOC_Os09g34150Os.49413.1.A1_x_at11/119+20157225..20161527NB-ARC domain containing protein, expressed
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed
LOC_Os09g34170NANA9+20171841..20172152hypothetical protein
LOC_Os09g34180Os.6745.1.S1_at11/119+20179233..20182541FH protein NFH2, putative, expressed
LOC_Os09g34190Os.9110.1.S1_at11/119+20182857..20185813thioesterase family protein, expressed
LOC_Os09g34200Os.50484.1.S1_at11/119+20186675..20191104F-box domain containing protein
LOC_Os09g34200OsAffx.30137.1.S1_at10/119+20186675..20191104F-box domain containing protein
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0016020cellular_componentmembrane
GO:0003779molecular_functionactin binding
GO:0005515molecular_functionprotein binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6745.1.S1_at--704--4451Chr09:20181933..20181957 (25 bp)
GCCTCAATCGGTGAGTTCCTGCAGA
LOC_Os09g34180
Os.6745.1.S1_at--1035--5271Chr09:20181956..20181980 (25 bp)
GAAGGCCGAAGCTGAGATCACCGCA
LOC_Os09g34180
Os.6745.1.S1_at--614--391Chr09:20181972..20181996 (25 bp)
ATCACCGCAGTGCAGGCTCAGGAGA
LOC_Os09g34180
Os.6745.1.S1_at--379--1211Chr09:20182030..20182054 (25 bp)
AGTTCTTCCACGGTGACTCGGTGAA
LOC_Os09g34180
Os.6745.1.S1_at--26--2891Chr09:20182060..20182084 (25 bp)
AAGGGCACCCTCTGAGAATCTTCAT
LOC_Os09g34180
Os.6745.1.S1_at--1153--9671Chr09:20182102..20182126 (25 bp)
TCACCGTTCTTGATCATGTCTGCAA
LOC_Os09g34180
Os.6745.1.S1_at--396--31Chr09:20182158..20182182 (25 bp)
ATTGGATCTTCGCTCCGGCTGGAGA
LOC_Os09g34180
Os.6745.1.S1_at--1111--4251Chr09:20182172..20182196 (25 bp)
CCGGCTGGAGAATGCACCTGTTCTT
LOC_Os09g34180
Os.6745.1.S1_at--326--3371Chr09:20182400..20182424 (25 bp)
CAGCCAATGGCCTACCAAAGGTGAA
LOC_Os09g34180
Os.6745.1.S1_at--318--10031Chr09:20182462..20182486 (25 bp)
TAGACAGGAGCTTTTGTGATCATGC
LOC_Os09g34180
Os.6745.1.S1_at--215--3531Chr09:20182482..20182506 (25 bp)
CATGCTGAATGCTTGAATCTCGTGA
LOC_Os09g34180
Target Sequence 
GCCTCAATCGGTGAGTTCCTGCAGAAGGCCGAAGCTGAGATCACCGCAGTGCAGGCTCAGGAGAGCCTCGCCCTCTCCCT
CGTCAGGGAGACGACCGAGTTCTTCCACGGTGACTCGGTGAAGGAGGAAGGGCACCCTCTGAGAATCTTCATGGTGGTGC
GCGACTTCCTCACCGTTCTTGATCATGTCTGCAAGGATGTCGGCAGGATGAACGAAAGAACAGCGATTGGATCTTCGCTC
CGGCTGGAGAATGCACCTGTTCTTNCGAGGTTCAACGCAGTCCAANCCCAGTANCTCCGAGGAGGAGAGCTCATCGTCCT
ANNCGTTGGAGCCTNCNTGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAAC
TGTANCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAANCATCATCCCAGCCAATGGCC
TACCAAAGGTGAAAGTGGCNTTGTACATGATTCAGCATGCTAAGAATCACTAGACAGGAGCTTTTGTGATCATGCTGAAT
GCTTGAATCTCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis