Browse Element(s) Details


Os.6776.1.S1_at

Description gb:AK067173.1
DB_XREF= gi:32977191
TID=Os.6776.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.6776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097O21, full insert sequence.
FL= gb:AK067173.1 gb:AK062569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3548011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35450Os.53142.1.S1_at1/117+21198852..21199319transposon protein, putative, unclassified
LOC_Os07g35460NANA7+21203594..21207115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g35470OsAffx.16566.1.S1_at11/117+21211957..21212657hypothetical protein
LOC_Os07g35480Os.6776.1.S1_at11/117+21221578..21224176Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35490OsAffx.5534.1.S1_at11/117+21228223..21228678hypothetical protein
LOC_Os07g35500Os.49928.1.S1_at11/117+21230447..21234094expressed protein
LOC_Os07g35510Os.14978.1.S1_a_at11/117+21236583..21239569Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_s_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520OsAffx.16567.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6776.1.S1_at--512--911Chr07:21222418..21222442 (25 bp)
AGGCTAGCGGCACGTGCAACTTCAA
LOC_Os07g35480
Os.6776.1.S1_at--695--5151Chr07:21222403..21222427 (25 bp)
GCAACTTCAATGGTGTCGCTTTCAT
LOC_Os07g35480
Os.6776.1.S1_at--301--3011Chr07:21222137..21222161 (25 bp)
AATGCACTAGACTACGCGTGCGGTA
LOC_Os07g35480
Os.6776.1.S1_at--342--10051Chr07:21222114..21222138 (25 bp)
TAGTTGTGCCGACTGCAGCGCCATA
LOC_Os07g35480
Os.6776.1.S1_at--539--7771Chr07:21222083..21222107 (25 bp)
GGTGCACAGTGCTTTAATCCGGACA
LOC_Os07g35480
Os.6776.1.S1_at--1057--10471Chr07:21222070..21222094 (25 bp)
TTAATCCGGACACCAAAGTGGCTCA
LOC_Os07g35480
Os.6776.1.S1_at--759--2871Chr07:21222055..21222079 (25 bp)
AAGTGGCTCACGCAACCTATGCATT
LOC_Os07g35480
Os.6776.1.S1_at--275--5691Chr07:21222026..21222050 (25 bp)
GACTATTACCAGACAGCCGGTCGGG
LOC_Os07g35480
Os.6776.1.S1_at--865--9311Chr07:21221772..21221796 (25 bp)
TCCCACCAAACAACGCTTGATCAGA
LOC_Os07g35480
Os.6776.1.S1_at--898--2291Chr07:21221604..21221628 (25 bp)
AAATGTACTGTTTGCTCCTGTTGAA
LOC_Os07g35480
Os.6776.1.S1_at--281--3011Chr07:21221581..21221605 (25 bp)
AATGAAATTCCGCAGTTACTTGTTT
LOC_Os07g35480
Target Sequence 
AGGCTAGCGGCACGTGCAACTTCAATGGTGTCGCTTTCATCGTCTACAAGCCATCACCAAGCATNTGCGATCCGAACCCA
AGTTGGTGCGTTGCGAAAGATAGTGTCGGGGAAGCACAACTACAGAATGCACTAGACTACGCGTGCGGTAGTTGTGCCGA
CTGCAGCGCCATACAGCGCGGTGCACAGTGCTTTAATCCGGACACCAAAGTGGCTCACGCAACCTATGCATTCAACGACT
ATTACCAGACAGCCGGTCGGGCCAGTGGCTCGTGTGACTTTGCCGGTGCCGCAACCATTGTCACACAACAACCAAAGATT
GGAAACTGCCTACTCCCACCAAACAACGCTTGATCAGAACAAACTGTNTAGGAAGACCAAAAGCTAGCCTAGCTAGCTAC
CAAAGGCAGTGAGGATGGGATNAAAGAATAATTCCATATTNTTNTACAGAGAAAATAAGGATTAAACTTTTTGTNTTTCC
CGTTGGAAATTTTAAATAAATAAATGTACTGTTTGCTCCTGTTGAATGAAATTCCGCAGTTACTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis