Browse Element(s) Details


Os.6791.1.S1_x_at

Description gb:AK110957.1
DB_XREF= gi:32996166
TID=Os.6791.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A08, full insert sequence.
FL= gb:AK110957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7251011/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g464801/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72490Os.9355.1.S1_at11/111+42364026..42366470lateral root primordium 1, putative, expressed
LOC_Os01g72500OsAffx.25007.2.S1_s_at8/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.2.S1_at7/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.1.S1_at6/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72510Os.6791.1.S1_x_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.6791.1.S1_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.46987.1.S1_x_at1/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72530Os.18922.2.S1_at11/111+42400970..42401831EF hand family protein, expressed
LOC_Os01g72540OsAffx.2462.1.S1_at11/111+42405531..42405986EF hand family protein
LOC_Os01g72550OsAffx.11828.1.S1_at11/111+42406965..42407405EF hand family protein
LOC_Os01g72560OsAffx.2463.1.S1_at11/111+42407915..42411891expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6791.1.S1_x_at--355--8352Chr07:27745735..27745758 (24 bp)
GGCGGGTTCGACACGTGCTACAACG
LOC_Os07g46480
Os.6791.1.S1_x_at--236--9511Chr01:42386261..42386285 (25 bp)
TCTCGGTGCCTACCGTCACGTTCAT
LOC_Os01g72510
Os.6791.1.S1_x_at--1149--9931Chr01:42386251..42386275 (25 bp)
TACCGTCACGTTCATGTTCGCCGGG
LOC_Os01g72510
Os.6791.1.S1_x_at--1118--5451Chr01:42386200..42386224 (25 bp)
GAACGTGATGATCCACAGCTCGTCG
LOC_Os01g72510
Os.6791.1.S1_x_at--257--8991Chr01:42386129..42386153 (25 bp)
TGAACGCGGCGCTCAATGTGCTGGC
LOC_Os01g72510
Os.6791.1.S1_x_at--745--771Chr01:42386114..42386138 (25 bp)
ATGTGCTGGCCAGCATGCAGCAGCA
LOC_Os01g72510
Os.6791.1.S1_x_at--1110--1511Chr01:42386096..42386120 (25 bp)
AGCAGCAGAACCAACGCGTGCTGTT
LOC_Os01g72510
Os.6791.1.S1_x_at--402--1431Chr01:42386090..42386114 (25 bp)
AGAACCAACGCGTGCTGTTCGACGT
LOC_Os01g72510
Os.6791.1.S1_x_at--833--8271Chr01:42386049..42386073 (25 bp)
GGCTTCTCCCGTGAGCTTTGCACGG
LOC_Os01g72510
Os.6791.1.S1_x_at--83--6591Chr01:42385876..42385900 (25 bp)
GATTGTAATAGGTGATTTCGTGTGG
LOC_Os01g72510
Os.6791.1.S1_x_at--605--7471Chr01:42385855..42385879 (25 bp)
GTGGGTTAAATCAATTATGTAGCAT
LOC_Os01g72510
Target Sequence 
GGCGGGTTCGACACGTGCTACAACGTGACCNTCTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGAC
GCTGCCGGAGGAGAACGTGATGATCCACAGCTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCCCTCGGACG
GCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACGCGTGCTGTTCGACGTCGCCAACGGCCGC
GTCGGCTTCTCCCGTGAGCTTTGCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGC
TTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGC
TGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6791.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis