CREP Browser

Os.6810.1.S1_at

Description

gb:AK102100.1
DB_XREF= gi:32987309
TID=Os.6810.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033083N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033083N01, full insert sequence.
FL= gb:AK102100.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g17410	10/11	leucine-rich repeat transmembrane protein kinase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g17390	OsAffx.17044.1.S1_at	11/11	8	+	10623966..10628024	expressed protein
LOC_Os08g17390	Os.11404.1.S1_s_at	11/11	8	+	10623966..10628024	expressed protein
LOC_Os08g17400	Os.27818.1.S1_at	11/11	8	+	10627000..10633260	WRKY DNA binding domain containing protein, expressed
LOC_Os08g17400	Os.27818.1.S2_at	11/11	8	+	10627000..10633260	WRKY DNA binding domain containing protein, expressed
LOC_Os08g17410	Os.6810.1.S1_at	10/11	8	+	10649176..10652201	leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g17420	Os.50704.1.S1_at	11/11	8	+	10666462..10670855	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17420	OsAffx.20303.1.S1_at	9/11	8	+	10666462..10670855	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17420	OsAffx.10048.1.S1_x_at	1/11	8	+	10666462..10670855	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17430	OsAffx.17045.1.S1_at	11/11	8	+	10675101..10675583	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556	biological_process	microsporogenesis
GO:0009729	biological_process	detection of brassinosteroid stimulus
GO:0009742	biological_process	brassinosteroid mediated signaling
GO:0009826	biological_process	unidimensional cell growth
GO:0010234	biological_process	tapetal cell fate specification
GO:0005768	cellular_component	endosome
GO:0005886	cellular_component	plasma membrane
GO:0016020	cellular_component	membrane
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity
GO:0019199	molecular_function	transmembrane receptor protein kinase activity
GO:0042803	molecular_function	protein homodimerization activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.6810.1.S1_at--129--87	1	Chr08:10649730..10649754 (25 bp)	ATGGCGACAGCAAAGTCCGATGTCT	LOC_Os08g17410
Os.6810.1.S1_at--611--387	1	Chr08:10649688..10649712 (25 bp)	CTGTTCGAGCTGATCACTGGCAAGA	LOC_Os08g17410
Os.6810.1.S1_at--937--343	1	Chr08:10649463..10649487 (25 bp)	CAGATCGTTGGCCTGCTCAAGGACA	LOC_Os08g17410
Os.6810.1.S1_at--894--517	1	Chr08:10649375..10649399 (25 bp)	GCAAGTGTAGGCAGTGAGCTCCTTA	LOC_Os08g17410
Os.6810.1.S1_at--64--591	1	Chr08:10649360..10649384 (25 bp)	GAGCTCCTTAGTTGTTTTGGCATAG	LOC_Os08g17410
Os.6810.1.S1_at--796--849	1	Chr08:10649343..10649367 (25 bp)	TGGCATAGTGGAGCTTCACTGCATT	LOC_Os08g17410
Os.6810.1.S1_at--685--429	1	Chr08:10649303..10649327 (25 bp)	CCTCTGCTGGGATATATCTTTTTCT	LOC_Os08g17410
Os.6810.1.S1_at--668--673	1	Chr08:10649259..10649283 (25 bp)	GTTCTTCCACTTGTTGAGATGTTGC	LOC_Os08g17410
Os.6810.1.S1_at--479--337	1	Chr08:10649219..10649243 (25 bp)	CACCTGCTCCTTACTAACAATGTTA	LOC_Os08g17410
Os.6810.1.S1_at--847--677	1	Chr08:10649198..10649222 (25 bp)	GTTACTACTACCATTGAGTCATGAC	LOC_Os08g17410
Os.6810.1.S1_at--276--563	1	Chr08:10649176..10649200 (25 bp)	GACACATGGAAGATAGCTCTCTCTC	NONE

Target Sequence

ATGGCGACAGCAAAGTCCGATGTCTACAGCTTCGGCGTCGTGCTGTTCGAGCTGATCACTGGCAAGAAGCCACTGGGGGA
CGACTACCCCNGNCAGAAGGAANCCAGCCTGNTGAACTGGNCTAGGNCGATGGTGAAGNCNAACCTCGGNCCGGGCATCA
TCGACCCAAAGATCCGNGACACCGGGCTGNAGAGNCAGATGGAGGAGNCCCTGAGGATCGCCTACCTCTGCACCGCCGAG
CTCCCCTCCAAGAGGCCGGCCATGCAGCAGATCGTTGGCCTGCTCAAGGACATTGAGCCTAAGGTAGCAGAGCAGGACTG
AAATAATATTACTANNNGTGTTTTTGGGGTATTGAAAAGCAAGTGTAGGCAGTGAGCTCCTTAGTTGTTTTGGCATAGTG
GAGCTTCACTGCATTGCCATGCCCTGCNCTCCTCTGCTGGGATATATCTTTTTCTTCTTTTTTGTTTCTTTTTTGTTCTT
CCACTTGTTGAGATGTTGCAATACAGCTTTGCTACACCTGCTCCTTACTAACAATGTTACTACTACCATTGAGTCATGAC
ACATGGAAGATAGCTCTCTCTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

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