Browse Element(s) Details


Os.6821.1.S1_at

Description gb:AK101183.1
DB_XREF= gi:32986392
TID=Os.6821.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029G04, full insert sequence.
FL= gb:AK062017.1 gb:AK101183.1 gb:AK101173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0768011/11CENP-E like kinetochore protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07640Os.22560.1.A1_s_at11/115+4080613..4083928expressed protein
LOC_Os05g07640Os.5838.1.S1_at11/115+4080613..4083928expressed protein
LOC_Os05g07650Os.12314.1.S1_at11/115+4085128..4087899Endomembrane protein 70 containing protein, expressed
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6821.1.S1_at--635--3871Chr05:4107755..4107779 (25 bp)
CTGTCAGAACTGCATGCTCGGGTAT
LOC_Os05g07680
Os.6821.1.S1_at--734--2671Chr05:4107671..4107695 (25 bp)
AAGCGCGAGGCGATCAGGCAACTGT
LOC_Os05g07680
Os.6821.1.S1_at--391--2351Chr05:4107554..4107578 (25 bp)
AAAGCTAGTGATCCTGATGCCATCC
LOC_Os05g07680
Os.6821.1.S1_at--889--4311Chr05:4107531..4107555 (25 bp)
CCTTCTCGGATGCTTTGTGGATGTT
LOC_Os05g07680
Os.6821.1.S1_at--980--7991Chr05:4107513..4107537 (25 bp)
GGATGTTTTCTGTCAATGGCAATGC
LOC_Os05g07680
Os.6821.1.S1_at--567--851Chr05:4107498..4107522 (25 bp)
ATGGCAATGCATGCTTTCCTGTGTC
LOC_Os05g07680
Os.6821.1.S1_at--739--4771Chr05:4107444..4107468 (25 bp)
GCTGCTGCTCTATAACTTGTGCACT
LOC_Os05g07680
Os.6821.1.S1_at--302--10691Chr05:4107418..4107442 (25 bp)
TTGCTTCTCCGGCTACTAAGAATTC
LOC_Os05g07680
Os.6821.1.S1_at--1102--7431Chr05:4107348..4107372 (25 bp)
GTGTACTCTTATAACTGTCGTCAGG
LOC_Os05g07680
Os.6821.1.S1_at--1059--4951Chr05:4107270..4107294 (25 bp)
GCATATCAGCTGTCAACTTTGTCAA
LOC_Os05g07680
Os.6821.1.S1_at--852--151Chr05:4107237..4107261 (25 bp)
ATTATCCTTGTGCTTTCCAATCCAA
LOC_Os05g07680
Target Sequence 
CTGTCAGAACTGCATGCTCGGGTATGCGAGCTCGAGAAAGAGGTAGAGATGCAGAAGCTTGTGATCTCTGAGAGCGCCGA
GGGGAAGCGCGAGGCGATCAGGCAACTGTGCTTCTCACTCGAGCACTACCGCAGCGGCTACCAGGAGCTGCGGCAGCTGC
TGCATGACCAGAAGAGACCACTGGTGATGGCAACATGAACCAAAGCTAGTGATCCTGATGCCATCCTTCTCGGATGCTTT
GTGGATGTTTTCTGTCAATGGCAATGCATGCTTTCCTGTGTCTCTCTCTCTCTCTCTTCTACCAGTAGCTTGCTGCTGCT
CTATAACTTGTGCACTGTTGCTTCTCCGGCTACTAAGAATTCTGTGTTGTGTCTTGCAATGTGATGGGATAATCAATATC
GTTTCTTGTGTACTCTTATAACTGTCGTCAGGTAATGGGCATAGTGATGTCTATCAATCTATGCTTGATCTTTGAAAGAT
GATATGCATATCAGCTGTCAACTTTGTCAAATGTGTGGATTATCCTTGTGCTTTCCAATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis