Browse Element(s) Details


Os.6847.1.S1_at

Description gb:AK064867.1
DB_XREF= gi:32974885
TID=Os.6847.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013113A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000I19, full insert sequence.
FL= gb:AK064867.1 gb:AK099891.1 gb:AY339367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2235011/11Glucose-6-phosphate 1-dehydrogenase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22330OsAffx.1196.1.S1_at2/117+12526658..12528047hypothetical protein
LOC_Os07g22330OsAffx.1196.1.S1_x_at1/117+12526658..12528047hypothetical protein
LOC_Os07g22340NANA7+12539465..12539676hypothetical protein
LOC_Os07g22350Os.6847.1.S1_at11/117+12542517..12548363Glucose-6-phosphate 1-dehydrogenase 2, chloroplast precursor, putative, expressed
LOC_Os07g22360OsAffx.28540.1.S1_at11/117+12550236..12550802hypothetical protein
LOC_Os07g22370OsAffx.5401.1.S1_at11/117+12553697..12554201hypothetical protein
LOC_Os07g22380OsAffx.28520.1.S1_at1/117+12555970..12561739retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22390Os.17052.2.S1_at2/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22390Os.52391.1.S1_x_at1/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22400Os.11383.1.S1_a_at11/117+12572886..12577971DNA primase large subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006006biological_processglucose metabolism
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004345molecular_functionglucose-6-phosphate 1-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6847.1.S1_at--540--3571Chr07:12542892..12542916 (25 bp)
CTTATGGAAGCCGCGGTCCTGTAGG
LOC_Os07g22350
Os.6847.1.S1_at--196--6531Chr07:12542827..12542851 (25 bp)
GATTTGACCACAGAACAGAAGGCAT
LOC_Os07g22350
Os.6847.1.S1_at--478--10751Chr07:12542824..12542848 (25 bp)
TTGACCACAGAACAGAAGGCATGAG
LOC_Os07g22350
Os.6847.1.S1_at--940--4431Chr07:12542762..12542786 (25 bp)
GCCATTGCATTTCTGTAAGATTGCA
LOC_Os07g22350
Os.6847.1.S1_at--184--71Chr07:12542759..12542783 (25 bp)
ATTGCATTTCTGTAAGATTGCATGC
LOC_Os07g22350
Os.6847.1.S1_at--736--7891Chr07:12542690..12542714 (25 bp)
GGTTGCAAGGCCTGTAACCATTAGA
LOC_Os07g22350
Os.6847.1.S1_at--749--10731Chr07:12542688..12542712 (25 bp)
TTGCAAGGCCTGTAACCATTAGACT
LOC_Os07g22350
Os.6847.1.S1_at--515--5171Chr07:12542686..12542710 (25 bp)
GCAAGGCCTGTAACCATTAGACTAT
LOC_Os07g22350
Os.6847.1.S1_at--241--2951Chr07:12542684..12542708 (25 bp)
AAGGCCTGTAACCATTAGACTATAA
LOC_Os07g22350
Os.6847.1.S1_at--440--8391Chr07:12542682..12542706 (25 bp)
GGCCTGTAACCATTAGACTATAAAT
LOC_Os07g22350
Os.6847.1.S1_at--855--9771Chr07:12542601..12542625 (25 bp)
TAAGGTCGCGAAGTCTTTATTTTCA
LOC_Os07g22350
Target Sequence 
CTTATGGAAGCCGCGGTCCTGTAGGGGCTCACTACCTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGACCACAGAA
CAGAAGGCATGAGACAGATGATATCTATTTTCGCTCCTTTTTTTTCTTTTGCCATTGCATTTCTGTAAGATTGCATGCTC
AGTTAGTGGGACAGATGGAAAATAAGGCAATCAGTTAGCTTAGGTTGCAAGGCCTGTAACCATTAGACTATAAATAGCTT
TGTGGTATATTCACTATTGGGTANAATTTTGGGCTTCCTGGAAGGCAAATATAAGGTCGCGAAGTCTTTATTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis