Browse Element(s) Details


Os.6910.1.S1_at

Description gb:AK062858.1
DB_XREF= gi:32972876
TID=Os.6910.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0015J15.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A11, full insert sequence.
FL= gb:AK062858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4041010/11expressed protein
LOC_Os03g187291/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40440Os.46052.1.S1_at11/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40440Os.46629.1.S1_s_at1/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40450OsAffx.20147.1.S1_x_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40450OsAffx.20147.1.S1_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40460Os.46629.1.S1_s_at5/1110+21337635..21338254Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40470Os.46629.1.S1_s_at1/1110+21341072..21341467Cortical cell delineating protein precursor, putative
LOC_Os10g40480Os.46629.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40480OsAffx.18589.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40490Os.25142.1.A1_at11/1110+21349409..21351745U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6910.1.S1_at--950--8612Chr10:21322709..21322733 (25 bp)
TGGTGTGGGACAACGGCACGCCCTT
LOC_Os10g40410
Os.6910.1.S1_at--282--10271Chr10:21322882..21322906 (25 bp)
TTTGCGGTGGGCTCGGATTCTTCGC
LOC_Os10g40410
Os.6910.1.S1_at--648--6571Chr10:21322897..21322921 (25 bp)
GATTCTTCGCTACTCTTGGCTTGGC
LOC_Os10g40410
Os.6910.1.S1_at--928--4931Chr10:21322915..21322939 (25 bp)
GCTTGGCTGCCACCTTGAACGACAA
LOC_Os10g40410
Os.6910.1.S1_at--539--1271NONE
AGATCCCCTATACTCCAAAAGTCTA
NONE
Os.6910.1.S1_at--390--2771Chr10:21325048..21325072 (25 bp)
AAGACCCCACTTCCTCAAGTGATGT
LOC_Os10g40410
Os.6910.1.S1_at--777--7391Chr10:21325071..21325095 (25 bp)
GTGATGGACTGAATTCTCTTGCCTT
LOC_Os10g40410
Os.6910.1.S1_at--657--5211Chr10:21325081..21325105 (25 bp)
GAATTCTCTTGCCTTCTTTAATCAG
LOC_Os10g40410
Os.6910.1.S1_at--543--731Chr10:21325128..21325152 (25 bp)
ATGTTCCTGATGGTTGTCTTTGTTG
LOC_Os10g40410
Os.6910.1.S1_at--149--4631Chr10:21325226..21325250 (25 bp)
GCGATGAGTGTCTTTGAGCAACTAT
LOC_Os10g40410
Os.6910.1.S1_at--1135--3711Chr10:21325259..21325283 (25 bp)
CTAAGGAATTGACTCTTGACGATTT
LOC_Os10g40410
Target Sequence 
TGGTGTGGGACAACGGCACGCCCTTCCCGGAGCCCTGCATCGACCGCCTCGCGCCGCACATCGGCAAGTACGAGGCGCTG
GCCTGGCTTTGCGGTGGGCTCGGATTCTTCGCTACTCTTGGCTTGGCTGCCACCTTGAACGACAAGGCCTCCAAGATCCC
CTATACTCCAAAAGTCTACCCATTTGACAATTTGAGAGAGGAACTTGGTGATAGACCATAGAAGAAGACCCCACTTCCTC
AAGTGATGTGATGGACTGAATTCTCTTGCCTTCTTTAATCAGAGAAAAAAACAGGACAATTCCAATGTTCCTGATGGTTG
TCTTTGTTGTCGCTGTATTTTTATAAGTTACAATCTTGTGATTTGCTGAATCCTGCCAAGCATGGCTTTGTTCTATAATA
ATGCGATGAGTGTCTTTGAGCAACTATTGCACATGCTAAGGAATTGACTCTTGACGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis