Browse Element(s) Details


Os.7075.1.S1_at

Description gb:AB122057.1
DB_XREF= gi:46093421
GEN=DAHPS30
TID=Os.7075.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7075 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) DAHPS30 mRNA for 3-deoxy-D-arabino heptulosonate-7-phosphate synthase, complete cds.
PROD=3-deoxy-D-arabino heptulosonate-7-phosphatesynthase
FL= gb:AK059247.1 gb:AB122057.1 gb:AK061085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2723011/11Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27200OsAffx.13071.1.S1_at7/113+15562084..15562526expressed protein
LOC_Os03g27210OsAffx.25247.2.S1_x_at10/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27210OsAffx.25247.1.S1_x_at3/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27230Os.7075.1.S1_at11/113+15582592..15587514Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os03g27250Os.45975.1.S1_a_at11/113+15592989..15600235transcription factor jumonji, putative, expressed
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7075.1.S1_at--128--7511Chr03:15585415..15585439 (25 bp)
GTGGTCTGAAGACACGCCCCTTTGA
LOC_Os03g27230
Os.7075.1.S1_at--100--7851Chr03:15586902..15586926 (25 bp)
GGTACGAGCATTCTTCGATGTGCAT
LOC_Os03g27230
Os.7075.1.S1_at--134--7471Chr03:15586952..15586976 (25 bp)
GTGTCCACCTCGAGATGACTGGGCA
LOC_Os03g27230
Os.7075.1.S1_at--423--2791Chr03:15587119..15587143 (25 bp)
AAGAGGATCCGGTCGTCGAAGCTGA
LOC_Os03g27230
Os.7075.1.S1_at--740--5391Chr03:15587136..15587160 (25 bp)
GAAGCTGAACAACATGTTGCCGTTG
LOC_Os03g27230
Os.7075.1.S1_at--538--6691Chr03:15587157..15587181 (25 bp)
GTTGCCACCCTTCGGTGTCTGAATC
LOC_Os03g27230
Os.7075.1.S1_at--192--5791Chr03:15587258..15587282 (25 bp)
GACGACGCCTATTCCATTTGTTGGT
LOC_Os03g27230
Os.7075.1.S1_at--432--10671Chr03:15587269..15587293 (25 bp)
TTCCATTTGTTGGTGGGATGCTCTT
LOC_Os03g27230
Os.7075.1.S1_at--179--271Chr03:15587352..15587376 (25 bp)
ATATGCTCTGTAATATCATGCCAGG
LOC_Os03g27230
Os.7075.1.S1_at--831--9191Chr03:15587370..15587394 (25 bp)
TGCCAGGCTGAAAGGCTTTGACATT
LOC_Os03g27230
Os.7075.1.S1_at--842--5671Chr03:15587389..15587413 (25 bp)
GACATTTCGGTTTTTCTATGTTTCT
LOC_Os03g27230
Target Sequence 
GTGGTCTGAAGACACGCCCCTTTGACTCCATTCTGGCCGNGGTACGAGCATTCTTCGATGTGCATGATCAAGAAGGAAGC
CACCCAGGAGGTGTCCACCTCGAGATGACTGGGCAGAACGTANCCGAGTGCATCGGCGGATCCCGAACCGTCACCTTCGA
TGACCTGGGTGACCGCTACCACACCCACTGCGACCCGAGGCTGAACGCGTCCCAGTCGCTGGAGCTCTCCTTCATCATCG
CCGAGAGGCTGAGGAGGAAGAGGATCCGGTCGTCGAAGCTGAACAACATGTTGCCGTTGCCACCCTTCGGTGTCTGAATC
TGAAATGGGTAAGGGAAACCAGGGGAAGACGGAGGAATGACGAACGGGGTAGATAAGATAGCTGCAGCAAGAACTCGACG
ACGCCTATTCCATTTGTTGGTGGGATGCTCTTGGTGAAATCCTATATTTTGCGAGCTTTTTTTTCTGTTGTAACTTTTCA
GTTGGTATATATATGCTCTGTAATATCATGCCAGGCTGAAAGGCTTTGACATTTCGGTTTTTCTATGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis