Browse Element(s) Details


Os.7076.1.S1_at

Description gb:AK121080.1
DB_XREF= gi:37990703
TID=Os.7076.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063D04, full insert sequence.
FL= gb:AK121080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g084103/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08370NANA7+4297292..4297936hypothetical protein
LOC_Os07g08380OsAffx.16155.1.S1_at11/117+4303154..4303414expressed protein
LOC_Os07g08390Os.53396.1.S1_at11/117+4303920..4305813uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os07g08400Os.46949.1.A1_at6/117+4311094..4317484guanylate-binding family protein, putative, expressed
LOC_Os07g08410Os.7076.1.S1_at3/117+4317380..4318468expressed protein
LOC_Os07g08420Os.1501.1.S1_at11/117+4320535..4324972bZIP transcription factor family protein, expressed
LOC_Os07g08430Os.32503.1.S1_x_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.32503.1.S1_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430OsAffx.10400.1.S1_x_at6/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.18743.2.S1_x_at2/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08440Os.8344.1.S1_at11/117+4336814..4340518Lipoamide dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7076.1.S1_at--674--3231NONE
CAAGAAGCTCATGGGCCTCCGTGAA
NONE
Os.7076.1.S1_at--1051--5211Chr07:4317457..4317481 (25 bp)
GAATACGTGGTATATCCTCCCGAAG
LOC_Os07g08410
Os.7076.1.S1_at--265--2751Chr07:4317411..4317435 (25 bp)
AAGAACTTCGTGAAAGGGCTCGCAA
LOC_Os07g08410
Os.7076.1.S1_at--58--2331Chr07:4317399..4317423 (25 bp)
AAAGGGCTCGCAAGATAGCTCGAAA
LOC_Os07g08410
Os.7076.1.S1_at--296--2111Chr07:4317353..4317377 (25 bp)
ACATGGACCATGATCACTTCGGACT
NONE
Os.7076.1.S1_at--567--8111Chr07:4317333..4317357 (25 bp)
GGACTCCCGCTATTTGTGACGAAAC
NONE
Os.7076.1.S1_at--184--5371Chr07:4317279..4317303 (25 bp)
GAAGACCAGCTGACTGTTTTTATCA
NONE
Os.7076.1.S1_at--497--7371Chr07:4317250..4317274 (25 bp)
GTGACTGTATGATCTTGTTGCTGTA
NONE
Os.7076.1.S1_at--150--6971Chr07:4317177..4317201 (25 bp)
GTAGCTTCATCAATAACTTCGTTCT
NONE
Os.7076.1.S1_at--670--9471Chr07:4317155..4317179 (25 bp)
TCTGTTCCCCTGGTGATTCATGAAA
NONE
Os.7076.1.S1_at--245--3531Chr07:4317103..4317127 (25 bp)
CATGAAATTTCAGCTGCTCTGGCCT
NONE
Target Sequence 
CAAGAAGCTCATGGGCCTCCGTGAATACGTGGTATATCCTCCCGAAGGTCCACGTCCACCACCTCCTGAAGAACTTCGTG
AAAGGGCTCGCAAGATAGCTCGAAAGAGGCAACAACAACAATAAATACATGGACCATGATCACTTCGGACTCCCGCTATT
TGTGACGAAACCGTGAGTCCAAGAGGAAGCTCAGAAAAGTGAAGACCAGCTGACTGTTTTTATCAATATGTGACTGTATG
ATCTTGTTGCTGTAAGATTTGAAATAAACCCAACTTATGTAAAATCTGTAAGAAACACAGTAGTAGCTTCATCAATAACT
TCGTTCTGTTCCCCTGGTGATTCATGAAATTTAGAGACCGGTTTNTTCTGATGGTTCATGAAATTTCAGCTGCTCTGGCC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis