Browse Element(s) Details


Os.7078.1.S1_at

Description gb:AK111376.1
DB_XREF= gi:32996585
TID=Os.7078.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A12, full insert sequence.
FL= gb:AK111376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5693011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56890OsAffx.24901.1.S1_at11/112+34871730..34871975hypothetical protein
LOC_Os02g56900Os.7664.1.S1_at10/112+34873717..34875127expressed protein
LOC_Os02g56910OsAffx.12676.1.S1_at11/112+34876958..34882553Sterol esterification protein, putative
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960Os.57452.1.S1_x_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960Os.12109.1.S1_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960OsAffx.27834.1.S1_at1/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56970Os.56323.1.S1_at11/112+34907845..34909606glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980OsAffx.24902.1.S1_s_at11/112+34909928..34912117nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990Os.8300.1.S1_at11/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g56990Os.8300.1.S1_s_at10/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g57000Os.55773.1.S1_at11/112+34914673..34915867C2 domain containing protein, expressed
LOC_Os02g57010Os.52459.1.S1_at11/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010Os.32596.1.S1_x_at1/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020Os.51208.1.S1_s_at11/112+34919502..34920398expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7078.1.S1_at--215--51Chr02:34895000..34895115 (25 bp)
ATTGCAAAGGGCCTGCGAGGCAATA
LOC_Os02g56930
Os.7078.1.S1_at--588--6171Chr02:34895107..34895131 (25 bp)
GAGGCAATAACCTCTACTCCGGCGG
LOC_Os02g56930
Os.7078.1.S1_at--989--7171Chr02:34895214..34895238 (25 bp)
GTCTGGCTCTAGTTTCTTCGATCTG
LOC_Os02g56930
Os.7078.1.S1_at--116--8331Chr02:34895218..34895242 (25 bp)
GGCTCTAGTTTCTTCGATCTGACTA
LOC_Os02g56930
Os.7078.1.S1_at--350--6411Chr02:34895233..34895257 (25 bp)
GATCTGACTAGATCTCAACTCTGAA
LOC_Os02g56930
Os.7078.1.S1_at--216--3271Chr02:34895248..34895272 (25 bp)
CAACTCTGAATAATGCAGCCTGCAT
LOC_Os02g56930
Os.7078.1.S1_at--788--651Chr02:34895260..34895284 (25 bp)
ATGCAGCCTGCATAATCAGCAGTTG
LOC_Os02g56930
Os.7078.1.S1_at--1075--4751Chr02:34895288..34895312 (25 bp)
GCTGCTTCTGCAAATAATGTCCCCA
LOC_Os02g56930
Os.7078.1.S1_at--212--2271Chr02:34895299..34895323 (25 bp)
AAATAATGTCCCCATCGATCGATGA
LOC_Os02g56930
Os.7078.1.S1_at--1152--4031Chr02:34895314..34895338 (25 bp)
CGATCGATGATCTCTTGTAGCAGTA
LOC_Os02g56930
Os.7078.1.S1_at--657--6411Chr02:34895322..34895346 (25 bp)
GATCTCTTGTAGCAGTAGCTTCCTC
LOC_Os02g56930
Target Sequence 
ATTGCAAAGGGCCTGCGAGGCAATAACCTCTACTCCGGCGGCGGCGCCAGCGAGGCGGCGAGGATGCTGGCCGATGCCGC
CGCGGCGTGCCAGGAGCTGAAGAAGCGGGCACTGGCTAGCCCCGTCTGGCTCTAGTTTCTTCGATCTGACTAGATCTCAA
CTCTGAATAATGCAGCCTGCATAATCAGCAGTTGAGCGCTGCTTCTGCAAATAATGTCCCCATCGATCGATGATCTCTTG
TAGCAGTAGCTTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis