Browse Element(s) Details


Os.7089.1.S1_at

Description gb:AK102018.1
DB_XREF= gi:32987227
TID=Os.7089.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0036B06.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080G09, full insert sequence.
FL= gb:AK102018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1664011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16589NANA10+7938931..7939202NA
LOC_Os10g16600NANA10+7943406..7950073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16610OsAffx.20566.1.S1_at10/1110+7952847..7953843hypothetical protein
LOC_Os10g16620OsAffx.30430.2.S1_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16620OsAffx.30430.1.S1_s_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16630NANA10+7959963..7960580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16640Os.7089.2.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16640Os.7089.1.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16650OsAffx.8319.1.S1_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16650OsAffx.8319.1.S1_x_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16660NANA10+7980816..7981264retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.31312.5.S1_x_at3/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.31312.2.S1_x_at2/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.28943.1.S1_x_at1/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16680NANA10+7986202..7986573retrotransposon protein, putative, unclassified
LOC_Os10g16690OsAffx.20565.1.S1_at11/1110+7989325..7992182retrotransposon protein, putative, unclassified
LOC_Os10g16700NANA10+7992682..7993329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16720Os.27691.1.S1_x_at1/1110+7998400..8003916retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7089.1.S1_at--627--5231Chr10:7968471..7968495 (25 bp)
GAATAGACATACAGAGTTTCCTCTT
LOC_Os10g16640
Os.7089.1.S1_at--167--6851Chr10:7968456..7968480 (25 bp)
GTTTCCTCTTTGCTTGCCTTAGAAA
LOC_Os10g16640
Os.7089.1.S1_at--278--4411Chr10:7968441..7968465 (25 bp)
GCCTTAGAAAGAGACCTGCATCCCT
LOC_Os10g16640
Os.7089.1.S1_at--548--1751Chr10:7968428..7968452 (25 bp)
ACCTGCATCCCTCTTTTCTGAAGGA
LOC_Os10g16640
Os.7089.1.S1_at--592--4192Chr10:7968402..7968426 (25 bp)
CCCCTGAAGTAATTAACTAGCTTGA
LOC_Os10g16640
Os.7089.1.S1_at--406--2011Chr10:7968387..7968411 (25 bp)
ACTAGCTTGATTGTTTACTGAACGC
LOC_Os10g16640
Os.7089.1.S1_at--293--6831Chr10:7968375..7968399 (25 bp)
GTTTACTGAACGCACTTCTCACTAA
LOC_Os10g16640
Os.7089.1.S1_at--546--5451Chr10:7968368..7968392 (25 bp)
GAACGCACTTCTCACTAATTTGATT
LOC_Os10g16640
Os.7089.1.S1_at--580--10771Chr10:7968349..7968373 (25 bp)
TTGATTTTCAAGTTCACTGCAGAGG
LOC_Os10g16640
Os.7089.1.S1_at--692--1971Chr10:7968334..7968358 (25 bp)
ACTGCAGAGGTGCTAGTGCCACCTT
LOC_Os10g16640
Os.7089.1.S1_at--937--1132Chr10:7968320..7968344 (25 bp)
AGTGCCACCTTTTGTATTGCAACAA
LOC_Os10g16640
Target Sequence 
GAATAGACATACAGAGTTTCCTCTTTGCTTGCCTTAGAAAGAGACCTGCATCCCTCTTTTCTGAAGGACCCCCTGAAGTA
ATTAACTAGCTTGATTGTTTACTGAACGCACTTCTCACTAATTTGATTTTCAAGTTCACTGCAGAGGTGCTAGTGCCACC
TTTTGTATTGCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis