Browse Element(s) Details


Os.7108.1.S1_at

Description gb:AK109082.1
DB_XREF= gi:32994291
TID=Os.7108.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H05, full insert sequence.
FL= gb:AK109082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3719011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein
LOC_Os02g37160Os.11252.1.S1_at11/112+22462319..22463919heavy metal-associated domain containing protein, expressed
LOC_Os02g37170OsAffx.2888.1.S1_at11/112+22465807..22466241hypothetical protein
LOC_Os02g37180Os.49112.1.S1_at9/112+22468765..22469820expressed protein
LOC_Os02g37190Os.7108.1.S1_at11/112+22471921..22473077expressed protein
LOC_Os02g37200Os.54430.1.S1_at2/112+22475779..22476610expressed protein
LOC_Os02g37210OsAffx.2889.1.S1_at11/112+22480288..22480518hypothetical protein
LOC_Os02g37220NANA2+22482259..22485830transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g37230OsAffx.15404.1.S1_at11/112+22487942..22489234hypothetical protein
LOC_Os02g37240OsAffx.27607.2.S1_s_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.27607.1.S1_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.24609.1.S1_at11/112+22489357..22494099hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7108.1.S1_at--150--5731Chr02:22472319..22472343 (25 bp)
GACTGCAAGCACTACTGCGACGGAT
LOC_Os02g37190
Os.7108.1.S1_at--979--6471Chr02:22472297..22472321 (25 bp)
GATACGACGACAAATCCTGCTGCGA
LOC_Os02g37190
Os.7108.1.S1_at--917--4491Chr02:22472224..22472248 (25 bp)
GCCGTATATACGTCGATATCGCCGT
LOC_Os02g37190
Os.7108.1.S1_at--511--5731Chr02:22472177..22472201 (25 bp)
GACTGTATACGCAACACAAGCTCGA
LOC_Os02g37190
Os.7108.1.S1_at--225--4811Chr02:22472158..22472182 (25 bp)
GCTCGATCGTAGTATTGCTTATTGC
LOC_Os02g37190
Os.7108.1.S1_at--859--9071Chr02:22472143..22472167 (25 bp)
TGCTTATTGCACTCTTCGTCGTCAT
LOC_Os02g37190
Os.7108.1.S1_at--253--331Chr02:22472116..22472140 (25 bp)
ATAAATTAAGGCACGCGTGTCAGCG
LOC_Os02g37190
Os.7108.1.S1_at--408--9171Chr02:22472080..22472104 (25 bp)
TGCCGACGTGCGTTTGTACGTACGT
LOC_Os02g37190
Os.7108.1.S1_at--796--6991Chr02:22472061..22472085 (25 bp)
GTACGTGTACGGCTTGCTAGGCCAT
LOC_Os02g37190
Os.7108.1.S1_at--728--8431Chr02:22472042..22472066 (25 bp)
GGCCATGAGTGTGAGCTCTTTCCAA
LOC_Os02g37190
Os.7108.1.S1_at--560--911Chr02:22472017..22472041 (25 bp)
AGGCTACATGTACTATGCGCCAGTC
LOC_Os02g37190
Target Sequence 
GACTGCAAGCACTACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCNACAAGTGCTGCT
CCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACAC
AAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGG
TGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATG
CGCCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis