Browse Element(s) Details


Os.7125.1.S1_at

Description gb:AK104408.1
DB_XREF= gi:32989617
TID=Os.7125.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E04, full insert sequence.
FL= gb:AK104457.1 gb:AK111966.1 gb:AK104408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3673011/11Myb-related protein Hv1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36700Os.12922.1.S1_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36700Os.47388.1.S1_s_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36710Os.3737.1.S1_at11/119+21171211..21173585Proteasome subunit alpha type 7, putative, expressed
LOC_Os09g36720OsAffx.6494.1.S1_at10/119+21174222..21174647hypothetical protein
LOC_Os09g36730Os.7125.1.S1_at11/119+21189041..21190257Myb-related protein Hv1, putative, expressed
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7125.1.S1_at--139--6191Chr09:21189510..21189534 (25 bp)
GAGGACCATCCTCATCAGCCGAAGG
LOC_Os09g36730
Os.7125.1.S1_at--808--7551Chr09:21189445..21189469 (25 bp)
GGGCCATGGGAAGCCACTCAAGTGC
LOC_Os09g36730
Os.7125.1.S1_at--595--9731Chr09:21189428..21189452 (25 bp)
TCAAGTGCCCTGACCTCAATCTGGA
LOC_Os09g36730
Os.7125.1.S1_at--71--3651Chr09:21189386..21189410 (25 bp)
CTTCCCAAGAAGAGCCCATGATGAT
LOC_Os09g36730
Os.7125.1.S1_at--694--1071Chr09:21189348..21189372 (25 bp)
AGGGAGACCGGCGTCTGCTTCAGCT
LOC_Os09g36730
Os.7125.1.S1_at--128--1131Chr09:21189290..21189314 (25 bp)
AGTGCAGCAGCTTCCTGGGACTCAG
LOC_Os09g36730
Os.7125.1.S1_at--224--8651Chr09:21189275..21189299 (25 bp)
TGGGACTCAGGACAGCCATGCTCGA
LOC_Os09g36730
Os.7125.1.S1_at--353--10571Chr09:21189206..21189230 (25 bp)
TTCTTCTTTCGTTTTGTCACTTGGA
LOC_Os09g36730
Os.7125.1.S1_at--940--11Chr09:21189180..21189204 (25 bp)
ATTGGTTAGCTTTTCTTCTAGGTGA
LOC_Os09g36730
Os.7125.1.S1_at--905--6011Chr09:21189120..21189144 (25 bp)
GAGAGATAACATCTCCTCTGCTGCT
LOC_Os09g36730
Os.7125.1.S1_at--201--9111Chr09:21189090..21189114 (25 bp)
TGCTCCATTTTGTCTCTGTTGTAAT
LOC_Os09g36730
Target Sequence 
GAGGACCATCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCC
ACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGA
AGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGA
CTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGAGCACCTCCTCCTCTGTAGTTTCTTCTTTCGTTTTG
TCACTTGGATATTGGTTAGCTTTTCTTCTAGGTGAAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAC
ATCTCCTCTGCTGCTCTTGCTGCTCCATTTTGTCTCTGTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis