Browse Element(s) Details


Os.7136.1.S1_at

Description gb:AK063767.1
DB_XREF= gi:32973785
TID=Os.7136.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 3-dehydroquinate dehydratase (B1111C09.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B08, full insert sequence.
FL= gb:AK063767.1 gb:AK121501.1 gb:AK073323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2775011/11Type I 3-dehydroquinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27720Os.19624.1.S1_at5/111+15780486..15784678zinc finger family protein, putative, expressed
LOC_Os01g27730Os.6742.1.S1_at11/111+15788950..15793626expressed protein
LOC_Os01g27740Os.22658.1.S1_at11/111+15801150..15805188DnaJ domain containing protein, expressed
LOC_Os01g27750Os.7136.1.S1_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27750Os.7136.2.S1_x_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27760OsAffx.23423.1.S1_at11/111+15821755..15823146hypothetical protein
LOC_Os01g27770OsAffx.11231.1.S1_at11/111+15829852..15832481dehydroquinate dehydratase, putative
LOC_Os01g27780Os.7136.2.S1_x_at1/111+15835107..15838538Shikimate/quinate 5-dehydrogenase family protein, expressed
LOC_Os01g27790OsAffx.10711.1.S1_x_at3/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790OsAffx.10711.1.S1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790Os.27544.1.A1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7136.1.S1_at--857--4591Chr01:15819949..15819973 (25 bp)
GCGACGGTTGTGAGTAATTAGCCCA
LOC_Os01g27750
Os.7136.1.S1_at--556--10451Chr01:15819966..15819990 (25 bp)
TTAGCCCAAATATTCCTCTGGGTTA
LOC_Os01g27750
Os.7136.1.S1_at--1157--7971Chr01:15820007..15820031 (25 bp)
GGATGCCAGCCCAATTTTGTGCTAG
LOC_Os01g27750
Os.7136.1.S1_at--1063--6631Chr01:15820045..15820069 (25 bp)
GTTGTAATGTTCGATTTCGCCGACT
LOC_Os01g27750
Os.7136.1.S1_at--413--10651Chr01:15820060..15820084 (25 bp)
TTCGCCGACTTAACCTGTCAGAGAT
LOC_Os01g27750
Os.7136.1.S1_at--489--351Chr01:15820137..15820161 (25 bp)
ATAACTGCGCAGTTGCTTGATGATC
LOC_Os01g27750
Os.7136.1.S1_at--694--7731Chr01:15820204..15820228 (25 bp)
GGTGGTTTCATGTTCATCATTCGTA
LOC_Os01g27750
Os.7136.1.S1_at--560--231Chr01:15820270..15820294 (25 bp)
ATATTCAGCTGCTTATGCTCTACTC
LOC_Os01g27750
Os.7136.1.S1_at--238--9911Chr01:15820290..15820314 (25 bp)
TACTCCTTTCCATTGTACTTCATGT
LOC_Os01g27750
Os.7136.1.S1_at--638--10811Chr01:15820302..15820326 (25 bp)
TTGTACTTCATGTCAGTCTGGAGAA
LOC_Os01g27750
Os.7136.1.S1_at--1154--3892Chr01:15820345..15820369 (25 bp)
CTGGACGTTTGACCTATGAATGTTC
LOC_Os01g27750
Target Sequence 
GCGACGGTTGTGAGTAATTAGCCCAAATATTCCTCTGGGTTAAGTTAATAAAAGTTTTGGATGCCAGCCCAATTTTGTGC
TAGGTGGAGATTAGTTGTTGTAATGTTCGATTTCGCCGACTTAACCTGTCAGAGATGTAAACAGAAAGTGTTCAATNTCA
TCATACTTGCAATAAAGAATTTGCATGCATAACTGCGCAGTTGCTTGATGATCNATGATGAGTTTTAAGGAAACAATACA
CATCAAGCTATGATCAGGTGGTTTCATGTTCATCATTCGTAATGGAACCAATATCTGTGATTGGCAATGATACATCATTG
TAATATTCAGCTGCTTATGCTCTACTCCTTTCCATTGTACTTCATGTCAGTCTGGAGAAGAAAGGTGTACGTGATTGCTG
GACGTTTGACCTATGAATGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis