Browse Element(s) Details


Os.7177.2.S1_a_at

Description gb:AK071455.1
DB_XREF= gi:32981478
TID=Os.7177.2
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7177 (NCBI UniGene Cluster)
UG_TITLE=EREBP-like protein (tsh1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full insert sequence.
FL= gb:AK067150.1 gb:AK071455.1 gb:AK104920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5761010/11Auxin response factor 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57570Os.28346.5.S1_at11/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.5.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.3.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.4.S1_x_at8/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_x_at5/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_at1/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_at11/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_x_at10/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.4.S1_x_at9/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57590Os.9269.1.S1_at11/114+34048840..34051785intracellular protease, PfpI family protein, expressed
LOC_Os04g57600Os.12216.1.S1_at11/114+34053596..34057602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57610Os.7177.2.S1_a_at10/114+34059415..34066783Auxin response factor 8, putative, expressed
LOC_Os04g57620OsAffx.26646.1.S1_at9/114+34073548..34077199hypothetical protein
LOC_Os04g57620OsAffx.21938.1.S1_at1/114+34073548..34077199hypothetical protein
LOC_Os04g57630Os.49680.1.S1_at11/114+34079714..34083512Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7177.2.S1_a_at--305--5811NONE
GACCCTTGGGAGTCCTTTGTGAATA
NONE
Os.7177.2.S1_a_at--1056--2991Chr04:34060211..34060235 (25 bp)
AATGATCCACGGTATCTGTCCTGAA
LOC_Os04g57610
Os.7177.2.S1_a_at--287--651Chr04:34059785..34059809 (25 bp)
ATGCACGTCGTCAGAAGTCCCAAAT
LOC_Os04g57610
Os.7177.2.S1_a_at--810--211Chr04:34059762..34059786 (25 bp)
ATTTGTATCTTGCATGTACGCCGTA
LOC_Os04g57610
Os.7177.2.S1_a_at--186--6991Chr04:34059747..34059771 (25 bp)
GTACGCCGTACATGTTTCCAGAACT
LOC_Os04g57610
Os.7177.2.S1_a_at--825--1431Chr04:34059728..34059752 (25 bp)
AGAACTCTCTGTTACCTATTCGGTG
LOC_Os04g57610
Os.7177.2.S1_a_at--260--6911Chr04:34059650..34059674 (25 bp)
GTATCGGTTTAACTCTTATCCTAGA
LOC_Os04g57610
Os.7177.2.S1_a_at--333--1311Chr04:34059628..34059652 (25 bp)
AGATGATTTGTAACTCGCACGGCAG
LOC_Os04g57610
Os.7177.2.S1_a_at--840--8891Chr04:34059528..34059552 (25 bp)
TGAGATTCCTCTACATGCTTTCAAC
LOC_Os04g57610
Os.7177.2.S1_a_at--716--2671Chr04:34059482..34059506 (25 bp)
AAGCGCACGAGGATTGTTTCAATTC
LOC_Os04g57610
Os.7177.2.S1_a_at--36--4231Chr04:34059434..34059458 (25 bp)
CCGATTGTCCGGTTATGTCAGTTTC
LOC_Os04g57610
Target Sequence 
GACCCTTGGGAGTCCTTTGTGAATAGTGTATGGTACATCAAGATACTTTCACCTGAGGATGTGCATAAGATGGGAAAGCA
AGGAAATGATCCACGGTATCTGTCCTGAAGTGAGAGAACANTGGTGCCATTTCTGGGCTTCCAGGAGGATTCTGCAGTGC
ATGGTGGCACTCTTGCTCTCGACAATGCACGTCGTCAGAAGTCCCAAATTTGTATCTTGCATGTACGCCGTACATGTTTC
CAGAACTCTCTGTTACCTATTCGGTGCAGGCCACCGGAACCACGAAACCTGATATTTTGTAGGTTCCACTTAGGAATCAG
TATCGGTTTAACTCTTATCCTAGATGATTTGTAACTCGCACGGCAGTCCACNTGTTTTCATGTTTCATCGAGTCTTCCTA
GACATTAAACTTAGTTGATATTGTATCAGGATTTATGTGTATTGAGATTCCTCTACATGCTTTCAACCNAAAAAAAACTG
CNAATAATCGAAGCGCACGAGGATTGTTTCAATTCGTGTTGTAGGATCTGGATTTTCACCGATTGTCCGGTTATGTCAGT
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7177.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis