Browse Element(s) Details


Os.7201.1.S1_at

Description gb:AK111540.1
DB_XREF= gi:37988203
TID=Os.7201.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037H01, full insert sequence.
FL= gb:AK111540.1 gb:AK105299.1 gb:AK112055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2894011/11Developmentally regulated GTP-binding protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28900NANA5+16856638..16862225retrotransposon protein, putative, unclassified
LOC_Os05g28910Os.28943.1.S1_x_at2/115+16862824..16865974retrotransposon protein, putative, unclassified
LOC_Os05g28920OsAffx.24330.2.S1_at1/115+16867880..16871004retrotransposon protein, putative, unclassified
LOC_Os05g28930OsAffx.4463.1.S1_at11/115+16873669..16879752hypothetical protein
LOC_Os05g28930OsAffx.17054.1.S1_at1/115+16873669..16879752hypothetical protein
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016023cellular_componentcytoplasmic membrane-bound vesicle
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7201.1.S1_at--1055--5551Chr05:16890644..16890668 (25 bp)
GAAAGCTCCTCTGAAGACCTGAATG
LOC_Os05g28940
Os.7201.1.S1_at--597--5551Chr05:16890676..16890700 (25 bp)
GAAACCGCAGTTTTGTCGGCTGTGC
LOC_Os05g28940
Os.7201.1.S1_at--276--3091Chr05:16890710..16890734 (25 bp)
AATAGAGCTACTTTTTTGCCTGGAG
LOC_Os05g28940
Os.7201.1.S1_at--1138--1611Chr05:16890733..16890757 (25 bp)
AGCTGGTTGAGCTGTGCGCTACTTT
LOC_Os05g28940
Os.7201.1.S1_at--158--8091Chr05:16890767..16890791 (25 bp)
GGAGCCCTGTTTTGTGCCTTCAGAA
LOC_Os05g28940
Os.7201.1.S1_at--941--2831Chr05:16890790..16890814 (25 bp)
AAGGGCCATACTTGAGTACTCGCCT
LOC_Os05g28940
Os.7201.1.S1_at--137--8771Chr05:16890829..16890853 (25 bp)
TGTATCTCTCTGCAGAACACACCTT
LOC_Os05g28940
Os.7201.1.S1_at--955--31Chr05:16890875..16890899 (25 bp)
ATTGTGTATCTGTGCACCATTGCAA
LOC_Os05g28940
Os.7201.1.S1_at--1142--2291Chr05:16890911..16890935 (25 bp)
AAATGGATGTGCTGCGCTTGTGTTA
LOC_Os05g28940
Os.7201.1.S1_at--242--5791Chr05:16890968..16890992 (25 bp)
GACGAAGATGCTCACTGCAGTGCAA
LOC_Os05g28940
Os.7201.1.S1_at--345--8231Chr05:16891026..16891050 (25 bp)
GGCACAAGCTCAAATCTGGACCGTT
LOC_Os05g28940
Target Sequence 
GAAAGCTCCTCTGAAGACCTGAATGTGGACATGAAACCGCAGTTTTGTCGGCTGTGCCAACATCAAAATAGAGCTACTTT
TTTGCCTGGAGCTGGTTGAGCTGTGCGCTACTTTTTTTCAATGTGGAGCCCTGTTTTGTGCCTTCAGAAGGGCCATACTT
GAGTACTCGCCTGGTTCCGTTCCTCCTGTATCTCTCTGCAGAACACACCTTTGCAGTGCAACTATGAACATCATTGTGTA
TCTGTGCACCATTGCAAATACGGNCGGCAAATGGATGTGCTGCGCTTGTGTTAGAATGTGGTGATAATGTCCAATATCCA
ATGTGGACGAAGATGCTCACTGCAGTGCAACCNATNGAACNTAATNAAATNGCNATNATNATNGANGNAGCATGGCACAA
GCTCAAATCTGGACCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis