Browse Element(s) Details


Os.7214.1.S1_at

Description gb:AB088391.1
DB_XREF= gi:37496994
GEN=OsFEN-1b
TID=Os.7214.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7214 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsFEN-1b mRNA for flap endonuclease-1b, complete cds.
PROD=flap endonuclease-1b
FL= gb:AK062149.1 gb:AB080084.1 gb:AB088391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6182011/11Flap endonuclease-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61780Os.49920.2.S1_at10/113+34964871..34967693expressed protein
LOC_Os03g61780Os.53362.2.S1_at1/113+34964871..34967693expressed protein
LOC_Os03g61790Os.17255.1.S1_at11/113+34967935..34970720RNA 3'-terminal phosphate cyclase family protein, expressed
LOC_Os03g61800Os.48315.1.S1_at11/113+34976288..34980561glycoside hydrolase family 28 protein, putative, expressed
LOC_Os03g61810Os.53628.2.S1_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61810Os.53628.1.S1_x_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61820Os.52839.1.S1_x_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61820Os.7214.1.S1_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61840Os.16408.1.S1_at1/113+34995699..34997516hypothetical protein
LOC_Os03g61850NANA3+35004591..35007446transposon protein, putative, Mutator sub-class
LOC_Os03g61860OsAffx.31561.1.S1_at10/113+35011077..35013575hypothetical protein
LOC_Os03g61870NANA3+35014043..35017247transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009408biological_processresponse to heat
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7214.1.S1_at--480--931Chr03:34990955..34990979 (25 bp)
AGGAAACTGGTTGAGGCTGCTTAAC
LOC_Os03g61820
Os.7214.1.S1_at--409--1951Chr03:34990960..34990984 (25 bp)
ACTGGTTGAGGCTGCTTAACTTTCC
LOC_Os03g61820
Os.7214.1.S1_at--152--6211Chr03:34990967..34990991 (25 bp)
GAGGCTGCTTAACTTTCCTGGTGTC
LOC_Os03g61820
Os.7214.1.S1_at--289--10491Chr03:34990975..34990999 (25 bp)
TTAACTTTCCTGGTGTCTTCTCTAG
LOC_Os03g61820
Os.7214.1.S1_at--815--3891Chr03:34990984..34991008 (25 bp)
CTGGTGTCTTCTCTAGGATGTGCAT
LOC_Os03g61820
Os.7214.1.S1_at--794--7451Chr03:34990987..34991011 (25 bp)
GTGTCTTCTCTAGGATGTGCATGTA
LOC_Os03g61820
Os.7214.1.S1_at--85--9551Chr03:34990995..34991019 (25 bp)
TCTAGGATGTGCATGTACCCCTCTC
LOC_Os03g61820
Os.7214.1.S1_at--347--4191Chr03:34991013..34991037 (25 bp)
CCCTCTCCATCACATACTTGAATTG
LOC_Os03g61820
Os.7214.1.S1_at--544--291Chr03:34991026..34991050 (25 bp)
ATACTTGAATTGTGATAGCCTTAGC
LOC_Os03g61820
Os.7214.1.S1_at--820--7391Chr03:34991037..34991061 (25 bp)
GTGATAGCCTTAGCATGATCTGTAT
LOC_Os03g61820
Os.7214.1.S1_at--1077--4431Chr03:34991043..34991067 (25 bp)
GCCTTAGCATGATCTGTATTAATCT
LOC_Os03g61820
Target Sequence 
AGGAAACTGGTTGAGGCTGCTTAACTTTCCTGGTGTCTTCTCTAGGATGTGCATGTACCCCTCTCCATCACATACTTGAA
TTGTGATAGCCTTAGCATGATCTGTATTAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis