Browse Element(s) Details


Os.7264.1.S1_at

Description gb:AK119874.1
DB_XREF= gi:37989497
TID=Os.7264.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-179-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-179-E06, full insert sequence.
FL= gb:AK119874.1 gb:AK119770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1478011/11Surp module family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14770Os.2450.3.S1_x_at11/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770Os.2450.1.S1_a_at10/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.29538.2.S1_s_at8/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.18275.1.A1_at1/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14780Os.7264.1.S1_at11/112+8197004..8199780Surp module family protein, expressed
LOC_Os02g14790Os.49813.1.S1_a_at11/112+8204989..8206392Peroxisomal targeting signal 2 receptor, putative, expressed
LOC_Os02g14800Os.54344.1.S1_x_at11/112+8209594..8218225expressed protein
LOC_Os02g14800Os.49260.1.S1_at11/112+8209594..8218225expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0006869biological_processlipid transport
GO:0003723molecular_functionRNA binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7264.1.S1_at--771--8931Chr02:8199103..8199127 (25 bp)
TGACGCTTCTCTTATACCAGCAGAA
LOC_Os02g14780
Os.7264.1.S1_at--1097--1511Chr02:8199121..8199145 (25 bp)
AGCAGAACAGTTCCTTGCTCAGCAC
LOC_Os02g14780
Os.7264.1.S1_at--164--9651Chr02:8199296..8199320 (25 bp)
TCAGTGTCTGTACCCAACCTTGATG
LOC_Os02g14780
Os.7264.1.S1_at--14--3091Chr02:8199360..8199384 (25 bp)
AATCACTCTCAGACACAGTTGGCAG
LOC_Os02g14780
Os.7264.1.S1_at--232--6011Chr02:8199405..8199429 (25 bp)
GAGAGTTGCAGCTCCCTGCTAATAA
LOC_Os02g14780
Os.7264.1.S1_at--519--2751Chr02:8199462..8199486 (25 bp)
AAGACAATCTCACTCTTGCTTACTA
LOC_Os02g14780
Os.7264.1.S1_at--255--9071Chr02:8199478..8199502 (25 bp)
TGCTTACTACAACATTGGCCCTGGA
LOC_Os02g14780
Os.7264.1.S1_at--762--1551Chr02:8199550..8199574 (25 bp)
AGCTTTCTTGTATCTCAGTGCACTG
LOC_Os02g14780
Os.7264.1.S1_at--195--1131Chr02:8199566..8199590 (25 bp)
AGTGCACTGGCAGGTTATTGCTTGC
LOC_Os02g14780
Os.7264.1.S1_at--103--7911Chr02:8199628..8199652 (25 bp)
GGTTGCTGCCTATTAATTTCTGTAT
LOC_Os02g14780
Os.7264.1.S1_at--337--8771Chr02:8199751..8199775 (25 bp)
TGTTTTAGCTTCTGCTGTTTTGCTG
LOC_Os02g14780
Target Sequence 
TGACGCTTCTCTTATACCAGCAGAACAGTTCCTTGCTCAGCACCCGGGCCCTGCTCACATCTCAGTGTCTGTACCCAACC
TTGATGAAGGAAACCTGCGAGGCCAAGTGTTGGAGATCGGTGTCCAATCACTCTCAGACACAGTTGGCAGTCTAAAGGAG
CAGATTGCTGGAGAGTTGCAGCTCCCTGCTAATAAGCAGAAGTTGAGCGTGCGGACTAGTTTCCTCAAAGACAATCTCAC
TCTTGCTTACTACAACATTGGCCCTGGAGTGGTGATCAATTTAACACTGAGGGAGCGNGGTGGGAGAAAGAAATGAGCTT
TCTTGTATCTCAGTGCACTGGCAGGTTATTGCTTGCAACTGAACTTGCAGCTATAAAGGAGAATATTTTTGTTGGTTGCT
GCCTATTAATTTCTGTATTCTCATGTTATGTTTAAACGTGGTGAAACACTGTTATTTGCACTATTTGAATGTCAGACATA
CATATCTCTTTATGGCCATCTNTTNAATTAAAATATATGTTTTAGCTTCTGCTGTTTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis